BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0070.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1879 [K] COG1396 Predicted transcriptional regulators Pae Pseu...   100   1e-21

>PA1879 [K] COG1396 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 184

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 1/122 (0%)

Query: 2   GRFESAQDAGLKRLVESSSHKVHLVCDLTHRLLAASASRQAEWRTDVSEFLGKSLLVYAS 61
            R E+A D  L RLVE++   VHL+CDLTHRLLA S +R A++   + E L +SL  Y S
Sbjct: 63  ARLEAAADQALARLVEANPQPVHLICDLTHRLLACSPARAAQFGVPLGELLDRSLWPYCS 122

Query: 62  PEILAADTTLDDLGWYD-GQLGSLEVETGPNFDANLVIAPGRLLWERITLADGTPARLVT 120
            EIL  + TL++LGW +     +LE  +G N  A + I   R  W R+TL+DG   RLV 
Sbjct: 123 EEILRQEATLEELGWRELLAPPALEFASGANASAIVPIRRSRCRWTRMTLSDGRAVRLVE 182

Query: 121 TI 122
           T+
Sbjct: 183 TL 184