BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0055.p         (165 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0812 [J] COG0242 N-formylmethionyl-tRNA deformylase Bme Bru...   237   9e-63
SMc01262 [J] COG0242 N-formylmethionyl-tRNA deformylase Sme Sino...   211   6e-55
AGc2856 [J] COG0242 N-formylmethionyl-tRNA deformylase Atu Agrob...   192   3e-49
BMEII0264 [J] COG0242 N-formylmethionyl-tRNA deformylase Bme Bru...   149   3e-36
PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudo...   140   1e-33

>BMEII0812 [J] COG0242 N-formylmethionyl-tRNA deformylase Bme Brucella
           melitensis
          Length = 203

 Score =  237 bits (604), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 140/164 (85%)

Query: 1   MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60
           MT+R IV+YPDPRL   AEPVT FD+ LR+L  DLL+TM AAPGIGITAPHIG+S RVVV
Sbjct: 40  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99

Query: 61  LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120
           LELD   GP+ Y+NPEI+    E I H+EGSVSMPGV DEVERHAR+R+RYQDLDGN QT
Sbjct: 100 LELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGNEQT 159

Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164
           EESDGL AVCHQHEIDQLDG+FW++RLSR++RERLIKRY+K+ R
Sbjct: 160 EESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 203


>SMc01262 [J] COG0242 N-formylmethionyl-tRNA deformylase Sme Sinorhizobium
           meliloti
          Length = 172

 Score =  211 bits (537), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 126/164 (76%)

Query: 1   MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60
           M +RPI+R+P P L   AE +  FD  LR+L+ DL++TM AAPGIGITA HIG+  R+ V
Sbjct: 1   MAVRPIIRFPSPLLTTSAERIGRFDGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60

Query: 61  LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120
           +E+D + GPR++VNPEI+  S E   H EGSVSMPGV +EVER  RVR+ +Q LDG  + 
Sbjct: 61  IEVDPQTGPRSFVNPEIVWQSSETAWHTEGSVSMPGVAEEVERPVRVRVSFQTLDGETRE 120

Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164
           EE++GL AVC QHEIDQL+G+FWIRRLSR+KRER +KR++K +R
Sbjct: 121 EEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNR 164


>AGc2856 [J] COG0242 N-formylmethionyl-tRNA deformylase Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 164

 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 119/161 (73%), Gaps = 1/161 (0%)

Query: 1   MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60
           M IRPI+ YP   L+    PVT+FDD LREL  DL++TM AAPG+GITA HIGV  RV V
Sbjct: 1   MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFV 60

Query: 61  LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120
           LEL       TY+NPEI   SP+ + H EGSVSMPG  DEVER + V +R+QD+ G  QT
Sbjct: 61  LELTPGT-ILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGAEQT 119

Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDK 161
           E ++G  A+C QHEIDQLDG+FW++RLSR+KR+RL+K+++K
Sbjct: 120 ETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEK 160


>BMEII0264 [J] COG0242 N-formylmethionyl-tRNA deformylase Bme Brucella
           melitensis
          Length = 187

 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 114/167 (68%), Gaps = 5/167 (2%)

Query: 1   MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60
           M+++P++  PDP L   ++PV  FDD LR+   D+ +TM+ APGIG+ A  +G  +R++V
Sbjct: 13  MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72

Query: 61  LELDAREG----PRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDG 116
           ++L A+EG    P  +VNP I+Q+S +   ++EG +S+P    EVER A V++ Y D DG
Sbjct: 73  IDL-AKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADG 131

Query: 117 NMQTEESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKIS 163
             Q+ E+DGL A C QHEID L+G+ +I  +S++KR+ +IK++ K++
Sbjct: 132 KPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLA 178


>PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudomonas
           aeruginosa
          Length = 168

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 1   MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60
           M I  I+ +PDPRL   A+PV + DDA+R+L  D+ ETM+ APGIG+ A  + V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  LEL-DAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQ 119
           ++L + +  PR ++NPE    + +M  ++EG +S+PG  + V+R  +VRI+  D DGN  
Sbjct: 61  MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120

Query: 120 TEESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164
            E ++GL AVC QHE D L+G  ++  LS +KR+R+ K+ +K  R
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165