BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0051.p         (213 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2372 [GEPR] COG0477 Permeases of the major facilitator superf...    89   1e-17
yhhS [GEPR] COG0477 Permeases of the major facilitator superfami...    76   7e-14
yfcJ [GEPR] COG0477 Permeases of the major facilitator superfami...    75   9e-14
ECs3206 [GEPR] COG0477 Permeases of the major facilitator superf...    75   1e-13
Z3585 [GEPR] COG0477 Permeases of the major facilitator superfam...    75   1e-13

>STM2372 [GEPR] COG0477 Permeases of the major facilitator superfamily Sty
           Salmonella typhimurium LT2
          Length = 392

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 88/162 (54%)

Query: 27  LTAILGAIWRPTLAFGLAVMSYIGTTSFVVLAFLHRGWQGGSIALFAFLAAFALARPVFS 86
           L +++G IW+P L   L  + +    +F+ L F+  GW      L AF  AF L R +F 
Sbjct: 211 LWSVVGLIWKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFG 270

Query: 87  GVCDRATGPRPILLALAALAGGMLILGLAPDEQTAIAGVIVAGCGMSMTYPLLALPVVRA 146
            + DR  G +  +++L     G+L+L LAP    A+ G  + G G S+ +P L + VV+ 
Sbjct: 271 WMPDRFGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFPALGVEVVKR 330

Query: 147 VPVTQIASGIGLFDAAYDVATLITPPLAGLIAATVGYFAVFL 188
           VP     + +G + A  D++  +T PLAG++A + GY +VFL
Sbjct: 331 VPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFL 372


>yhhS [GEPR] COG0477 Permeases of the major facilitator superfamily Eco
           Escherichia coli K12
          Length = 419

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 25  VPLTAILGAIWRPTLAFGLAVMSYIGTTSFVVLAFLHRGWQGGSIALFAFLAAFALARPV 84
           +P  A+LG +W   +A  LA   +    +F+ L +  +GW G + AL  F  AF   R +
Sbjct: 225 LPFRAVLGRVWLYGMALALASAGFGVIATFITLFYDAKGWDGAAFALTLFSCAFVGTRLL 284

Query: 85  FSGVCDRATGPRPILLALAALAGGMLILGLAPDEQTAIAGVIVAGCGMSMTYPLLALPVV 144
           F    +R  G    ++  +    G+L++G+A     A  GV++AG G S+ +P L +  V
Sbjct: 285 FPNGINRIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALGVVAV 344

Query: 145 RAVPVTQIASGIGLFDAAYDVATLITPPLAGLIAATVGYFAVFLVLAGISLLARRLVCTR 204
           +AVP     + +  +    D++  +T PLAGL+ +  G   ++L  AG  L+A  L+ T 
Sbjct: 345 KAVPQQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAG--LVAIALLLTW 402

Query: 205 ELR 207
            L+
Sbjct: 403 RLK 405


>yfcJ [GEPR] COG0477 Permeases of the major facilitator superfamily Eco
           Escherichia coli K12
          Length = 392

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%)

Query: 27  LTAILGAIWRPTLAFGLAVMSYIGTTSFVVLAFLHRGWQGGSIALFAFLAAFALARPVFS 86
           L +++G IW+P L   L  + +    +FV L F  +GW      L AF  AF + R +F 
Sbjct: 211 LWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFG 270

Query: 87  GVCDRATGPRPILLALAALAGGMLILGLAPDEQTAIAGVIVAGCGMSMTYPLLALPVVRA 146
            + DR  G +  +++L     G+L+L  AP    A+AG  + G G S+ +P L + VV+ 
Sbjct: 271 WMPDRFGGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKR 330

Query: 147 VPVTQIASGIGLFDAAYDVATLITPPLAGLIAATVGYFAVFL 188
           VP     + +G + A  D+A  ++ PLAG++A T GY +VFL
Sbjct: 331 VPSQVRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFL 372


>ECs3206 [GEPR] COG0477 Permeases of the major facilitator superfamily Ecs
           Escherichia coli O157:H7
          Length = 392

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%)

Query: 27  LTAILGAIWRPTLAFGLAVMSYIGTTSFVVLAFLHRGWQGGSIALFAFLAAFALARPVFS 86
           L +++G IW+P L   L  + +    +FV L F  +GW      L AF  AF + R +F 
Sbjct: 211 LWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFG 270

Query: 87  GVCDRATGPRPILLALAALAGGMLILGLAPDEQTAIAGVIVAGCGMSMTYPLLALPVVRA 146
            + DR  G +  +++L     G+L+L  AP    A+AG  + G G S+ +P L + VV+ 
Sbjct: 271 WMPDRFGGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKR 330

Query: 147 VPVTQIASGIGLFDAAYDVATLITPPLAGLIAATVGYFAVFL 188
           VP     + +G + A  D+A  ++ PLAG++A T GY +VFL
Sbjct: 331 VPSQVRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFL 372


>Z3585 [GEPR] COG0477 Permeases of the major facilitator superfamily EcZ
           Escherichia coli O157:H7 EDL933
          Length = 392

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%)

Query: 27  LTAILGAIWRPTLAFGLAVMSYIGTTSFVVLAFLHRGWQGGSIALFAFLAAFALARPVFS 86
           L +++G IW+P L   L  + +    +FV L F  +GW      L AF  AF + R +F 
Sbjct: 211 LWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFG 270

Query: 87  GVCDRATGPRPILLALAALAGGMLILGLAPDEQTAIAGVIVAGCGMSMTYPLLALPVVRA 146
            + DR  G +  +++L     G+L+L  AP    A+AG  + G G S+ +P L + VV+ 
Sbjct: 271 WMPDRFGGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKR 330

Query: 147 VPVTQIASGIGLFDAAYDVATLITPPLAGLIAATVGYFAVFL 188
           VP     + +G + A  D+A  ++ PLAG++A T GY +VFL
Sbjct: 331 VPSQVRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFL 372