BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0050.p         (200 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3897 [GER] COG0697 Permeases of the drug/metabolite transporte...    93   5e-19

>PA3897 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Pae Pseudomonas aeruginosa
          Length = 300

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 101/201 (50%), Gaps = 2/201 (0%)

Query: 1   MPSGLAALVLSTSSLFAAVIARAALGVPISSGFVSGALCGILGLAIIFLPGAAAHGAAPL 60
           +PSGL A+V ST++L+ A+ AR   G  I+S  ++G   G+LGL ++F P    H A P 
Sbjct: 87  IPSGLVAVVFSTATLWNALNARLWFGQRIASNVMAGGGLGLLGLGLLFWPELVGHQATPE 146

Query: 61  AGFAWALTAAIAT--GAGTTVGARNQRAGLPVVSVLGWGAFVGAAASALWAVATGTPFAA 118
             +   L          G  + +  Q+AG+  ++   W    G        +  G P + 
Sbjct: 147 TFYGLGLALLGTLCFSTGNMLSSLQQKAGIRPLTGNAWSMLYGTLILLALCLFQGVPLSF 206

Query: 119 DISLSYVASFLYLAIAASCITFMLYFELVRRLGPGRAAYTLALVPLVALVLSALFEHLAL 178
           D S  YV S LYLAI  S I F  Y  LV R+GP RAAY   L P+VAL +SA  E    
Sbjct: 207 DWSARYVGSLLYLAIPGSVIGFTAYLTLVGRMGPDRAAYCTVLFPVVALNISAFAEGYRW 266

Query: 179 GWPVLAGAATILAGNVLVLAR 199
             P LAG   ++ GNVLV  +
Sbjct: 267 TAPALAGLVLVMLGNVLVFRK 287