BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0044.p         (107 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5360 [K] COG0640 Predicted transcriptional regulators Mlo Mes...   128   3e-30
SMb20608 [K] COG0640 Predicted transcriptional regulators Sme Si...   108   3e-24
RSc0993 [K] COG0640 Predicted transcriptional regulators Rso Ral...    98   5e-21
mlr2173 [K] COG0640 Predicted transcriptional regulators Mlo Mes...    93   1e-19
RSc1960 [K] COG0640 Predicted transcriptional regulators Rso Ral...    89   3e-18

>mll5360 [K] COG0640 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 114

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 78/107 (72%)

Query: 1   MANLDAAFSALADPTRRAILARLALGEATVMELVEPFDMTQPAISRHLKVLEGAGLIVRR 60
           M  LDA F+ALADPTRRAILARL  GEA+VMEL EPF M+QP+IS+HLKVLE AGLI R 
Sbjct: 1   MNQLDATFAALADPTRRAILARLIQGEASVMELAEPFAMSQPSISKHLKVLENAGLISRG 60

Query: 61  IEGTKRPCRLAPSAVAEIDQWLGMLRRALETNYDRLDDVLAAMKPEQ 107
            +  +RPCRL    +AE + WL   R+  E N+ RLD +L AMK E+
Sbjct: 61  RDAQRRPCRLEAKPLAEANDWLERYRKIWEGNFQRLDALLDAMKAER 107


>SMb20608 [K] COG0640 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 112

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query: 1   MANLDAAFSALADPTRRAILARLALGEATVMELVEPFDMTQPAISRHLKVLEGAGLIVRR 60
           M  L +  SALADPTRRAI+ARLA GEATV EL  PF+M+ PA+S+HLKVLE AGLI R 
Sbjct: 1   MDQLSSTLSALADPTRRAIVARLAAGEATVNELAAPFEMSLPAVSKHLKVLERAGLISRG 60

Query: 61  IEGTKRPCRLAPSAVAEIDQWLGMLRRALETNYDRLDDVLAAMK 104
                RPCRL  + + EI  W+   R   E ++DRLD  L  ++
Sbjct: 61  RNAQWRPCRLEAAPLKEIADWVERYRHFWEGSFDRLDSYLHELQ 104


>RSc0993 [K] COG0640 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 121

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 61/93 (65%)

Query: 4   LDAAFSALADPTRRAILARLALGEATVMELVEPFDMTQPAISRHLKVLEGAGLIVRRIEG 63
           L   F+ALADPTRRAILARL+ GEA V EL  PFD++ PAIS+HL+VL  AGLI R +  
Sbjct: 8   LSTIFAALADPTRRAILARLSAGEAPVSELARPFDISAPAISKHLRVLAEAGLIEREVSA 67

Query: 64  TKRPCRLAPSAVAEIDQWLGMLRRALETNYDRL 96
             R C L P A+ E   WL   R+  E N DRL
Sbjct: 68  RWRICHLRPGALREAHGWLEAYRQLWEGNLDRL 100


>mlr2173 [K] COG0640 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 111

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 3   NLDAAFSALADPTRRAILARLALGEATVMELVEPFDMTQPAISRHLKVLEGAGLIVRRIE 62
           +LD  F+ALADPTRRAILARL  GEA+V EL +PF +T  A+S+H+ VLE AGL+ R   
Sbjct: 6   SLDDTFAALADPTRRAILARLLEGEASVAELAQPFALTVRAVSKHVGVLEQAGLVTRSRA 65

Query: 63  GTKRPCRLAPSAVAEIDQWLGMLRRALETNYDRLDDVL--AAMKPE 106
             K   R+    + +ID+WL   R+  E  +DR++D+L   A +PE
Sbjct: 66  AQKHLSRIELRPLRDIDRWLDDYRKLWEGRFDRMEDLLRRGADRPE 111


>RSc1960 [K] COG0640 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 118

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 64/105 (60%)

Query: 2   ANLDAAFSALADPTRRAILARLALGEATVMELVEPFDMTQPAISRHLKVLEGAGLIVRRI 61
           A+LD  F ALAD TRR++LA+L  G A+V EL  P  M+ PA+ +HL VLE +GL+    
Sbjct: 6   ASLDLTFQALADATRRSMLAQLTRGPASVSELARPLGMSLPAVMQHLAVLEHSGLVRSEK 65

Query: 62  EGTKRPCRLAPSAVAEIDQWLGMLRRALETNYDRLDDVLAAMKPE 106
            G  R CR+ P A++  +QW+   R   E ++DRL   LA +  E
Sbjct: 66  TGRVRTCRIEPQALSLAEQWINQRRIEWEHHFDRLGAYLATLGQE 110