BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0035.p (324 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 267 3e-71 PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 126 8e-29 AGc3458 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 122 9e-28 mll4559 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 119 1e-26 ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpor... 117 3e-26 >PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 333 Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/287 (45%), Positives = 192/287 (66%), Gaps = 1/287 (0%) Query: 32 IRIDWATYNPVSMVLKQKGLLEKEFAKDGINIVWVQSAGSNKALEFLNAGSIDLGSTAGS 91 IR+D+A Y P S+ L++ G LEK G + WV S GSN++LE+LNAGS+D STAG Sbjct: 32 IRLDYAYYAPTSLALRKFGWLEKSLDGSGTRVRWVFSQGSNRSLEYLNAGSVDFASTAGL 91 Query: 92 AALVAKINGNPIKSIYVYSRPEWTALVTTRDSRIASVADLKGKRVAVTRGTDPHIFLVRA 151 AA++A+ NG+P++++YV SRPEWTAL+ +DS I S+A+LKG++VA T+GTDP++FL+R+ Sbjct: 92 AAVLARANGSPVRTVYVASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTDPYLFLLRS 151 Query: 152 LLGAGLTEKDITPVLLQHADGKTALIRGDVDAWAGLDPMMAQAEVEDGAKLFYRKAEANT 211 L GL + D+ V LQH DG+ AL +G VDAWAGLDP MA +E++ G++L YR N+ Sbjct: 152 LHSVGLDKNDLRIVHLQHPDGRVALEKGQVDAWAGLDPHMAASELQAGSRLLYRNLGFNS 211 Query: 212 WGILNVREEFLKAHPDIVRRVLATYEEARKYSLANYDELKKTFIAVTKLPDAVVDKQLKE 271 +G+LNVRE+F + HP ++R+VLA YE+AR + + + DE + LP V QL Sbjct: 212 YGVLNVREDFAERHPQLIRQVLAAYEQARHWVIGHPDEAAQLLAEEAGLPLEVARLQLS- 270 Query: 272 RTELTHSRIGSAQRESILAAGLALQQAGVIDAKTDVKAALDSLIDDQ 318 RT+ + G+ Q ++ AA L ++ DV+ +D LI Q Sbjct: 271 RTDFSQPLPGAEQVAALKAAAPILADERLVRPGVDVQKVVDELIAPQ 317 >PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 323 Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 5/233 (2%) Query: 32 IRIDWATYNPVSMVLKQKGLLEKEFAKDGINIVWVQSAGSNKALEFLNAGSIDLGSTAGS 91 +RI + Y + ++LK +G LEK A+DG+ + W + G + LE LN GSID G T + Sbjct: 32 LRIGYQKYGTL-VLLKARGTLEKRLAEDGVKVQWTEFPGGPQLLEGLNVGSIDFGVTGET 90 Query: 92 AALVAKINGNPIKSI-YVYSRPEWTALVTTRDSRIASVADLKGKRVAVTRGTDPHIFLVR 150 + A+ G + + Y P A++ +DS I SVA+LKG++VA+ +G++ H LVR Sbjct: 91 PPVFAQAAGADLLYVAYEPPAPTSEAILLPKDSPIRSVAELKGRKVALNKGSNVHYLLVR 150 Query: 151 ALLGAGLTEKDITPVLLQHADGKTALIRGDVDAWAGLDPMMAQAEVEDGAKLFY--RKAE 208 AL AGL DI PV L AD + A R VDAW DP A AE + A++ R+ Sbjct: 151 ALEQAGLKYSDIQPVYLPPADARAAFERHSVDAWVIWDPYQAAAEKQLSARVLVDGRELV 210 Query: 209 ANTWGILNVREEFLKAHPDIVRRVLATYEEARKYSLANYDELKKTFIAVTKLP 261 N L R + + HP ++ +++ E +S AN ++ + + LP Sbjct: 211 DNHQFYLATR-TYAQRHPQVLDKLVDEIREVGDWSRANPQQVTEQVAPLLGLP 262 >AGc3458 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 383 Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 133/272 (48%), Gaps = 8/272 (2%) Query: 4 FSRRTFAALLAVST---LLPGAARAADALKEIRIDWATYNPVSMVLKQKGLLEKEFAKDG 60 +RR LLA ST LP RA A +RI W N V + K +G LE G Sbjct: 64 ITRRGTLGLLAGSTGAVFLPHIRRAGAATTTLRIGWQK-NGVIALAKSQGALEALLKDRG 122 Query: 61 INIVWVQSAGSNKALEFLNAGSIDLGSTAGSAALVAKINGNPIKSIYVY-SRPEWTALVT 119 I + W + + LE L AG++D+G T L A+ G ++ + Y + +A++ Sbjct: 123 IEVKWSEFSSGPPLLEALGAGALDIGPTGDVPPLFAQAAGGNLRYVGTYKAAAGGSAILV 182 Query: 120 TRDSRIASVADLKGKRVAVTRGTDPHIFLVRALLGAGLTEKDITPVLLQHADGKTALIRG 179 +DS + ++ DLKGK+VA RG+ H V+AL AGLT DITPV L D A G Sbjct: 183 QKDSPLKTLEDLKGKKVAFKRGSSAHNVTVKALRKAGLTLSDITPVDLAPPDAAAAFRSG 242 Query: 180 DVDAWAGLDPMMAQAEVEDGAKLFYRKAEA--NTWGILNVREEFLKAHPDIVRRVLATYE 237 +DAW+ DP A AE E ++ AE + W +F++A+PD+V +L Sbjct: 243 SIDAWSIWDPYFAVAEKEPTTRVL-STAEGIVDPWSYFLANGDFVEANPDLVPLILKELA 301 Query: 238 EARKYSLANYDELKKTFIAVTKLPDAVVDKQL 269 + AN D K+ A+T +P+ V L Sbjct: 302 NVGAKAQANIDATAKSLAAITGVPEDVTKVSL 333 >mll4559 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Mlo Mesorhizobium loti Length = 317 Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 136/266 (51%), Gaps = 9/266 (3%) Query: 1 MQKFSRRTFA-ALLAVSTLLPGAARAADALKEIRIDWATYNPVSMVLKQKGLLEKEFAKD 59 M +RR F LLA S L A AA LK++ I + + ++ +Q+ ++EK + Sbjct: 1 MFNLTRRVFGIGLLAASIGLSFGA-AAQELKQLNIGYQKTG-LPVIARQQQVIEKALSDK 58 Query: 60 GINIVWVQSAGSNKALEFLNAGSIDLGSTAGSAALVAKING-NPIKSIYVYSRPEWTALV 118 G+ + WV+ +E LN G+ID G T + + + G N + + + S + A+ Sbjct: 59 GVAVKWVEFTAGPPLVEALNVGAIDAGWTGDAPPIFGQSAGANIVYAAALPSNGDGEAIF 118 Query: 119 TTRDSRIASVADLKGKRVAVTRGTDPHIFLVRALLGAGLTEKDITPVLLQHADGKTALIR 178 S + SVADLKGKRV V +GT H LV AL AG+ +TPV L AD A Sbjct: 119 VKPASPVQSVADLKGKRVGVGKGTSAHNLLVAALEKAGVPFDQVTPVYLSPADAAAAFAS 178 Query: 179 GDVDAWAGLDPMMAQAEVEDGAKLFYRKAE---ANTWGILNVREEFLKAHPDIVRRVLAT 235 +DAWA DP A AE ++ R +E NT+ + N ++F KAHP+I+ +A Sbjct: 179 DQIDAWAVWDPFFAIAETRYQPRVLARSSEVLKVNTYFLAN--KDFAKAHPEIITTTIAA 236 Query: 236 YEEARKYSLANYDELKKTFIAVTKLP 261 EA K++ N D++ + VT +P Sbjct: 237 LGEAAKWADQNRDKVAEALHEVTGVP 262 >ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Eco Escherichia coli K12 Length = 333 Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 136/284 (47%), Gaps = 19/284 (6%) Query: 1 MQKFSRRTFAALLAVSTLLPGAARAADALKEIRIDWATYNPVSMVL-KQKGLLEKEFAKD 59 M+ + A LL+VST A + +AL RI + + MVL K LLEK + + Sbjct: 15 MRNIIKLALAGLLSVSTFAVAAESSPEAL---RIGYQK-GSIGMVLAKSHQLLEKRYPES 70 Query: 60 GINIVWVQSAGSNKALEFLNAGSIDLGSTAGSAALVAKINGNPIKSIYVYS-RPEWTALV 118 I+ WV+ + LE LN GSIDLGST + A+ G + + V +P+ ++ Sbjct: 71 KIS--WVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVIL 128 Query: 119 TTRDSRIASVADLKGKRVAVTRGTDPHIFLVRALLGAGLTEKDITPVLLQHADGKTALIR 178 +S I +VADLKG +VA +G+ H L+RAL AGL DI P L AD + A + Sbjct: 129 VAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ 188 Query: 179 GDVDAWAGLDPMMAQAEVEDGAKLFYRKAEANTWGILNVREEFLKAHP------DIVRRV 232 G+VDAWA DP + A ++ G ++ + N G +L A P ++ V Sbjct: 189 GNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSF-----YLAARPYAEKNGAFIQGV 243 Query: 233 LATYEEARKYSLANYDELKKTFIAVTKLPDAVVDKQLKERTELT 276 LAT+ EA + + ++ LP V+ L R T Sbjct: 244 LATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTT 287