BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0008.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2080 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib... 160 3e-39 RSc0538 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 96 1e-19 CC0334 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib... 86 5e-17 PA3006 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 76 5e-14 VC1741 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae 76 8e-14 >CC2080 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides Length = 222 Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 124/196 (63%), Gaps = 2/196 (1%) Query: 6 TRSAILAAAERLYADRGFGDVTLRDIVAEANVNLAAVNYHFGSKDELIAELFVTRSIQTN 65 T++ + AAERL+A GF +V++RDI A A VNLA+VNYHFGSKD L+ E+F R+ + N Sbjct: 22 TKNLVFVAAERLFALHGFQNVSVRDITAAAGVNLASVNYHFGSKDALLFEIFKRRTAELN 81 Query: 66 RERLNELRAAEEKGGGRASIEDIMRALVGPTLRGCLGPDREGSTAARFMIRASIESVPPI 125 RER L A ++ G + +I+ AL+ P LR L PD E + +F+IRA E I Sbjct: 82 RERAKMLHEANDRNVGSPPLREILAALLTPPLR-WLAPDHERRISLQFLIRARSEGTDEI 140 Query: 126 RRIKNREVDHLRKFAAAMRRAMPASSDTELYWGLHFALAMAHHT-IREKERLLRLSEGKC 184 R++ +V HLR+F+ A+ RA P S E+YW LHF L M H+ E +RL LSEG+ Sbjct: 141 RQVLKTDVSHLRRFSDALLRARPDLSPEEVYWRLHFTLGMLHNNRFAEFDRLNVLSEGQT 200 Query: 185 DLDDVHAIIDRVVTVS 200 DV A++DR+++ + Sbjct: 201 SEADVVALLDRMLSFA 216 >RSc0538 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 340 Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 6 TRSAILAAAERLYADRGFGDVTLRDIVAEANVNLAAVNYHFGSKDELIAELFVTRSIQTN 65 T++ IL A E L+ + G+ ++LR I A A VNLAAVNYHFGSK+ L+ + R N Sbjct: 9 TKNRILEATELLFIEFGYEAMSLRQITARAKVNLAAVNYHFGSKEALMQSVLGRRLDPLN 68 Query: 66 RERLNELRAAEEKGGGRASIEDIMRALVGPTLRGCLGPDREGSTAARFMIRASIESVPPI 125 RL L A EE+ R S E ++ AL P L+ PD G R M R ++ P Sbjct: 69 TRRLALLTACEERWPQRLSCEHVLGALFVPALQMARTPDTGGPAFLRLMGRVYSDTSP-- 126 Query: 126 RRIKNREVDH----LRKFAAAMRRAMPASSDTELYWGLHFAL 163 ++N + H +F A R +P EL W LHFAL Sbjct: 127 -FVQNYLLGHYAPVFDRFFEAFSRTLPGLPRAELGWRLHFAL 167 >CC0334 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides Length = 257 Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 4/200 (2%) Query: 7 RSAILAAAERLYADRGFGDVTLRDIVAEANVNLAAVNYHFGSKDELIAELFVTRSIQTNR 66 + IL AAE L+A GF VT R + AEA V+ A ++Y+FG+K EL +F+ R+ N+ Sbjct: 46 KETILDAAEGLFARHGFYGVTTRQVAAEAGVDTALIHYYFGAKRELFDAVFLRRAEILNQ 105 Query: 67 ERLNELRAAEEKGGGRASIEDIMRALVGPTLRGCLGPDREGSTAARFMIRASIESVPPI- 125 R + A + G ++E ++ A + P LR + D + F++ A + + P Sbjct: 106 AREASMNAYVKANAGAMTVEGVIEAFIDPLLR--ISQDGGRGWKSYFVLVAQVNNTPAWG 163 Query: 126 RRIKNREVDH-LRKFAAAMRRAMPASSDTELYWGLHFALAMAHHTIREKERLLRLSEGKC 184 R D + + ++ P ++ +LYW F T+ E R+ LSEG+C Sbjct: 164 GETMTRFFDPVVHQLVETLKTVRPEAAYRDLYWCYQFLTGSMMLTLSETGRIDSLSEGEC 223 Query: 185 DLDDVHAIIDRVVTVSVTAL 204 D+ ++ R+ Sbjct: 224 HSSDLESVRQRLFAYCAAGF 243 >PA3006 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 233 Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 1 MASDQTRSAILAAAERLYADRGFGDVTLRDIVAEANVNLAAVNYHFGSKDELIAEL---F 57 MA +T IL AAE+L+A++GF + +LR I ++A VNLAAVNYHFGSK LI + F Sbjct: 1 MAQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRF 60 Query: 58 VTRSIQTNRERLNELRAAEEKGGGRASIEDIMRALVGPTLRGCLGPDREGSTAARFMIRA 117 + + + L+ +A E A++ED++ LV + + S R + A Sbjct: 61 LGPFCASLEKELDRRQAKPE--AQHATLEDLLHLLVSQAMAVKPRSGNDLSIFMRLLGLA 118 Query: 118 SIESVPPIRRIKNREVDH-LRKFAAAMRRAMPASSDTELYWGLHFALAMAHHTI 170 +S +R+ R++ + A P EL+W +HF L A ++ Sbjct: 119 FSQSQGHLRKYLEEVYGKVFRRYMLLVNEAAPKLPPIELFWRVHFMLGAAAFSM 172 >VC1741 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae Length = 224 Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 24/204 (11%) Query: 6 TRSAILAAAERLYADRGFGDVTLRDIVAEANVNLAAVNYHFGSKDELI-------AELFV 58 T+ IL AE L+A+ GF D +LR I ++A VNLA+VNYHFG K L+ E F+ Sbjct: 23 TKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVNYHFGDKKTLVRAVLNRYLEAFM 82 Query: 59 TRSIQTNRERLNELRAAEEKGGGRASIEDIMRALVGPTLRGCLGPDREGSTAARFMI--- 115 Q+ ERLNE + + ++ AL P LR L R T +RFM+ Sbjct: 83 PEMKQS-LERLNERDDYD--------MAEVFEALRAP-LRS-LSELRPNGT-SRFMLLIG 130 Query: 116 RASIESVPPIRR-IKNREVDHLRKFAAAMRRAMPASSDTELYWGLHFALAMAHHTIREKE 174 R + +R I NR D L F ++ +A P + L+W LHF L T+ + Sbjct: 131 RGYTDVQGHLRWFITNRYNDVLTLFTDSVLKANPNLTRETLFWRLHFTLGTCVFTMASSQ 190 Query: 175 RLLRLSEGKCDLD-DVHAIIDRVV 197 L ++E D +++D+++ Sbjct: 191 ALAEIAENDFGSKVDPKSVVDQLI 214