BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0007.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0690 Non COG                                                        162   2e-40
PA2550 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug...   142   1e-34
DRA0196 [I] COG1960 Acyl-CoA dehydrogenases Dra Deinococcus radi...   134   8e-32
RSc2020 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana...    98   6e-21
MT0163 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tub...    92   2e-19

>CC0690 Non COG
          Length = 435

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 101/132 (76%), Gaps = 7/132 (5%)

Query: 1   MDFTMSPKQKEWLERVQAFMKAHVRPAVPIYDKQ-DAEGP-RWKVIPILEDLKKKAKAEG 58
           MDF +SPKQ+ +L+RV AFM  HV PA+P Y+ + +  G  RWKV+ ++EDLKKKAKA G
Sbjct: 1   MDFDISPKQRAFLDRVTAFMDEHVYPAIPAYEAEMNVLGAERWKVVQVVEDLKKKAKAAG 60

Query: 59  LWNMFMPPSS---HEDD--EFHGAGLTNLEYALLSEEMGRISWASEVFNCSAPDTGNMEV 113
           LWN FMPP S   H DD  +F G  LTNLEY+L++E++G++ +ASEVFNCSAPDTGNMEV
Sbjct: 61  LWNFFMPPHSGQTHVDDTFQFEGVQLTNLEYSLIAEQLGKVGFASEVFNCSAPDTGNMEV 120

Query: 114 FIRYGTKEXKKK 125
            +RYGT   K+K
Sbjct: 121 LMRYGTLAQKEK 132


>PA2550 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa
          Length = 409

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 89/124 (71%), Gaps = 6/124 (4%)

Query: 1   MDFTMSPKQKEWLERVQAFMKAHVRPAVPIYDKQDAEGPRWKVIPILEDLKKKAKAEGLW 60
           MDF  SPK +E  ERV AFM+AHV PA  ++++Q AEG RW+   I+E+LK KAKAEGLW
Sbjct: 1   MDFAYSPKVQELRERVSAFMEAHVYPAEAVFERQVAEGDRWQPTAIMEELKAKAKAEGLW 60

Query: 61  NMFMPPSSHEDDEFHGAGLTNLEYALLSEEMGRISWASEVFNCSAPDTGNMEVFIRYGTK 120
           N+F+P S       +GAGL N EYA L+E MGR     E FNC+APDTGNMEV +RYG++
Sbjct: 61  NLFLPESE------YGAGLANHEYAPLAEIMGRSLIGPEPFNCAAPDTGNMEVLVRYGSE 114

Query: 121 EXKK 124
           E K+
Sbjct: 115 EQKR 118


>DRA0196 [I] COG1960 Acyl-CoA dehydrogenases Dra Deinococcus radiodurans
          Length = 415

 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 87/123 (70%), Gaps = 1/123 (0%)

Query: 3   FTMSPKQKEWLERVQAFMKAHVRPAVPIYDKQDAEGPRWKVIPILEDLKKKAKAEGLWNM 62
           F  +P+ ++  ER+  FM  ++ P    + +Q   G RW  + ++E+LK KA+AEGLWN+
Sbjct: 4   FDTTPRAQDLRERLLRFMDTYIYPNEAEFHRQVESGERWAPVELIEELKPKARAEGLWNL 63

Query: 63  FMPPSSHEDDEFHGAGLTNLEYALLSEEMGRISWASEVFNCSAPDTGNMEVFIRYGTKEX 122
           F+PP+S  + +F GAGLTNLEYA L E MGR+ WA EVFNC+APDTGNMEV  RYGT E 
Sbjct: 64  FLPPASDPEGKF-GAGLTNLEYAGLCEIMGRVWWAPEVFNCNAPDTGNMEVIARYGTPEQ 122

Query: 123 KKK 125
           +++
Sbjct: 123 QEQ 125


>RSc2020 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum
          Length = 420

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 9/129 (6%)

Query: 1   MDFTMSPKQKEWLERVQAFMKAHVRPAVPIYDKQ----DAEGPRWKVIPILEDLKKKAKA 56
           M F  SPK KE   R+  F   H+ P    + ++       G  W    ++E LK  A+ 
Sbjct: 1   MHFDYSPKVKEMQARLLDFFDRHIYPNEHRFHEEVEANRRAGNAWVPTRVIEALKPLARE 60

Query: 57  EGLWNMFMPPSSHEDDEFHGAGLTNLEYALLSEEMGRISWASEVFNCSAPDTGNMEVFIR 116
            GLWN+F+P S    +     GL+NLEYA L E MGR+ WA EVFNCSAPDTGNME   R
Sbjct: 61  AGLWNLFLPRSPRAPE-----GLSNLEYAPLCEIMGRVPWAPEVFNCSAPDTGNMETLER 115

Query: 117 YGTKEXKKK 125
           Y ++  K +
Sbjct: 116 YASEALKDR 124


>MT0163 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tuberculosis
           CDC1551
          Length = 407

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/128 (43%), Positives = 73/128 (57%), Gaps = 12/128 (9%)

Query: 1   MDFTMSPKQKEWLERVQAFMKAHVRPAVPIYDK-QDAEGPR-WKVIPILEDLKKKAKAEG 58
           MDF MS K  ++  R+  FM  HV  A   YD  + A GP      PI+E+LK KAK  G
Sbjct: 1   MDFAMSAKAIDYRTRLSDFMTEHVFGAEADYDDYRRAAGPADHTAPPIIEELKTKAKDRG 60

Query: 59  LWNMFMPPSSHEDDEFHGAGLTNLEYALLSEEMG-RISWASEVFNCSAPDTGNMEVFIRY 117
           LWN+F+   S         GLTNLEYA L+E  G  +  A E  NC+APDTGNME+   +
Sbjct: 61  LWNLFLSAES---------GLTNLEYAPLAEMTGWSMEIAPEALNCAAPDTGNMEILHMF 111

Query: 118 GTKEXKKK 125
           GT++ + +
Sbjct: 112 GTEQQRAQ 119