BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0235.0004.p         (121 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM4057 Non COG                                                       135   3e-32

>STM4057 Non COG
          Length = 131

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 74/113 (65%)

Query: 3   YLTASMIPDPDAAAAYMKPGTVITFTGGREFDHPRGPTSFNAKRYRWVKKKMDRFDVCPG 62
           +L ASMIPD + AA YM P   ITFTGGR          FN  RY+WVKK +  FD    
Sbjct: 14  FLVASMIPDAERAATYMHPEVKITFTGGRAMAGAADIAQFNGARYKWVKKALGEFDAVQH 73

Query: 63  TDETVVYSVGTLYGEWTDGTPFEGNRYVDRFVVRGGQIVKMDVWNDSAERILV 115
               V+YS GTLYGEW DG PF GNR++DRF VR G+I +MDVWNDSAE ILV
Sbjct: 74  DHYVVIYSNGTLYGEWPDGRPFAGNRFIDRFEVRDGKITRMDVWNDSAEWILV 126