BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0234.0006.p         (65 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA139 [L] COG3464 Transposase and inactivated derivatives Atu ...   102   2e-22

>AGpA139 [L] COG3464 Transposase and inactivated derivatives Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 404

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 58/65 (89%)

Query: 1   MENAGRAFLDAVRKSMRQMRAVIGATTIDPKLLTAAERLQYEGYLRREETNAAILTLSKN 60
           MENA RAFLDAVRKSMRQ+R  + AT ++PKLLTAAERLQYEGYLRRE+TNAAI+ L+K+
Sbjct: 123 MENASRAFLDAVRKSMRQIRKTLKATRVNPKLLTAAERLQYEGYLRREQTNAAIIALAKD 182

Query: 61  GIPIE 65
           GI I+
Sbjct: 183 GIMIK 187