BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0233.0003.p         (79 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0051 [T] COG4566 Response regulator Bme Brucella melitensis       80   8e-16
AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaci...    80   2e-15
mll0990 [T] COG4566 Response regulator Mlo Mesorhizobium loti          72   3e-13
AGl1128 [T] COG4566 Response regulator Atu Agrobacterium tumefac...    71   7e-13
mll0983 [T] COG4566 Response regulator Mlo Mesorhizobium loti          68   5e-12

>BMEII0051 [T] COG4566 Response regulator Bme Brucella melitensis
          Length = 212

 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 49/62 (79%)

Query: 7   FETLSPREQAVMKLVATGLMNKQIAAELGLAEITVKIYRGHVMRKMRARSLADLIRMTGT 66
           ++TL+  E+AV KLV  GLMNKQIAAEL +AE+TVK+ R H+M KMRA+SLADL+RM   
Sbjct: 144 YQTLNQGERAVFKLVVQGLMNKQIAAELDVAEVTVKVRRSHLMHKMRAKSLADLVRMATE 203

Query: 67  LG 68
           L 
Sbjct: 204 LN 205


>AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 218

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 52/70 (74%)

Query: 5   SLFETLSPREQAVMKLVATGLMNKQIAAELGLAEITVKIYRGHVMRKMRARSLADLIRMT 64
           SL   L+PRE+ VM  V  GLMNKQIA ELG++E+TVK++RG+VMRKM ARS+ADL+R  
Sbjct: 147 SLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTVKLHRGNVMRKMEARSVADLVRKA 206

Query: 65  GTLGIRANRP 74
             +G +   P
Sbjct: 207 ELIGEKLRPP 216


>mll0990 [T] COG4566 Response regulator Mlo Mesorhizobium loti
          Length = 212

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 47/57 (82%)

Query: 5   SLFETLSPREQAVMKLVATGLMNKQIAAELGLAEITVKIYRGHVMRKMRARSLADLI 61
           +L+ETL+PRE+ V++ V  G MNKQIA +LG++EITVK++R ++M+KM ARSL  L+
Sbjct: 145 ALYETLTPREREVLRFVVAGAMNKQIAFDLGISEITVKLHRSNMMKKMNARSLTHLL 201


>AGl1128 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 182

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 7   FETLSPREQAVMKLVATGLMNKQIAAELGLAEITVKIYRGHVMRKMRARSLADLIRMTGT 66
           F+TL+PRE+ V+  V  G +NKQIA ELG++EITVK++R +VMRKMR  S+ +LIR   +
Sbjct: 117 FDTLTPRERQVLGEVVRGRLNKQIAFELGISEITVKLHRSNVMRKMRTTSVGELIRAWDS 176

Query: 67  L 67
           L
Sbjct: 177 L 177


>mll0983 [T] COG4566 Response regulator Mlo Mesorhizobium loti
          Length = 246

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)

Query: 6   LFETLSPREQAVMKLVATGLMNKQIAAELGLAEITVKIYRGHVMRKMRARSLADLIRMTG 65
           LF  L+PRE+ V++ VA G ++KQIA +LG++EITVK++RG+ MRKM+A S+  LI+   
Sbjct: 171 LFAALTPRERQVLREVARGRVSKQIAFDLGISEITVKLHRGNAMRKMKAASIGQLIQSWE 230

Query: 66  TL 67
           TL
Sbjct: 231 TL 232