BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0012.p (282 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0032_2 [C] COG1902 NADH Rso Ralstonia solanacearum 395 e-110 mll5434 [C] COG1902 NADH Mlo Mesorhizobium loti 337 2e-92 RSc1826_2 [C] COG1902 NADH Rso Ralstonia solanacearum 336 4e-92 RSc0702 [C] COG1902 NADH Rso Ralstonia solanacearum 233 3e-61 PA3723 [C] COG1902 NADH Pae Pseudomonas aeruginosa 226 6e-59 >RSp0032_2 [C] COG1902 NADH Rso Ralstonia solanacearum Length = 384 Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/277 (72%), Positives = 229/277 (82%), Gaps = 3/277 (1%) Query: 1 VHQNSQARIGIQLGHAGRKGSTRVAWEGMDEALPDHNWPLVSASSVPYLADG--QIPEPM 58 VH +S+AR+GIQLGHAG KGSTRVAWEG+D LPD NWPL+SAS YL DG Q M Sbjct: 86 VHDHSEARLGIQLGHAGAKGSTRVAWEGIDLPLPDGNWPLISASPQQYL-DGVSQWSRAM 144 Query: 59 SRAEMDEVREQFVAAARRAAAAGFDILELHCAHGYLLSSFLSPLTNRRIDDYGGSIENRA 118 +R +MD VR+ FV AAR A AGFD LELHCAHGYLLSSF+SPLTN R D YGG++ENR Sbjct: 145 TRDDMDRVRDDFVRAARLAVEAGFDWLELHCAHGYLLSSFISPLTNLRSDAYGGALENRL 204 Query: 119 RYPLEVFRAVRAVWPEDKPMSVRLSCHDWAEGGNTPDDALAFAKLFKEAGADLIDCSSGQ 178 RYPLEVFRAVRAVWP ++PMSVR+S HDW +GG TPDDA+ A+LFK AGAD+IDCSSGQ Sbjct: 205 RYPLEVFRAVRAVWPAERPMSVRISAHDWVQGGITPDDAVEIARLFKAAGADMIDCSSGQ 264 Query: 179 VWADDHPVYGRLYQTPFADKIRNEVGIATIAVGAISEADHANSIIAAGRADLCAIARPHL 238 V + PVYGR+YQTPFAD++RNE GIATIAVGAISEADH NSIIAAGRADLCA+ARPHL Sbjct: 265 VSKKEQPVYGRMYQTPFADRVRNEAGIATIAVGAISEADHVNSIIAAGRADLCAVARPHL 324 Query: 239 ADPAWTLHEAAKIGVKQIAWPKQYLSGKSQYEANLER 275 A+PAWTL+EAA+IG + WP+QY +GK Q E NLER Sbjct: 325 ANPAWTLNEAARIGYLDMPWPRQYRAGKLQLERNLER 361 >mll5434 [C] COG1902 NADH Mlo Mesorhizobium loti Length = 369 Score = 337 bits (864), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 161/283 (56%), Positives = 208/283 (73%), Gaps = 2/283 (0%) Query: 1 VHQNSQARIGIQLGHAGRKGSTRVAWEGMDEALPDHNWPLVSASSVPYLADGQIPEPMSR 60 VH ++A+I Q+GH+G KGSTR+ WEG D L NWP+++AS+V + + Q+P+ M R Sbjct: 86 VHSETEAKICAQIGHSGAKGSTRLGWEGTDVPLASGNWPVMAASAVAWSPENQVPKAMDR 145 Query: 61 AEMDEVREQFVAAARRAAAAGFDILELHCAHGYLLSSFLSPLTNRRIDDYGGSIENRARY 120 A+MD VR QFV +A A GFD+LE+H AHGYLLSSF++P+TNRR D+YGGS+ENR RY Sbjct: 146 ADMDLVRNQFVVSAEMAERCGFDMLEIHAAHGYLLSSFITPVTNRRTDEYGGSLENRMRY 205 Query: 121 PLEVFRAVRAVWPEDKPMSVRLSCHDWAE-GGNTPDDALAFAKLFKEAGADLIDCSSGQV 179 PLE+F AVRA WP +KP+S+R+S +DW G TP DA+ A+L EAG D+ D S+GQ Sbjct: 206 PLEIFHAVRAAWPAEKPISMRISANDWVGIEGVTPADAVEIARLLHEAGVDICDVSAGQT 265 Query: 180 WADDHPVYGRLYQTPFADKIRNEVGIATIAVGAISEADHANSIIAAGRADLCAIARPHLA 239 P+YGR++QTPF+D+IRNEVG+AT+AVG I E DH NSI+ AGRADL A+ARPHLA Sbjct: 266 SVSAKPIYGRMFQTPFSDRIRNEVGMATMAVGNIYEPDHVNSILMAGRADLVALARPHLA 325 Query: 240 DPAWTLHEAAKIGVKQIAWPKQYLSGKSQYEANLER-AAAGVK 281 DP WTLH A +G + + WP YL G+ Q ER AAAG+K Sbjct: 326 DPYWTLHAAVTLGDRGVKWPDPYLPGRDQIYRLAERDAAAGLK 368 >RSc1826_2 [C] COG1902 NADH Rso Ralstonia solanacearum Length = 364 Score = 336 bits (861), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 164/279 (58%), Positives = 201/279 (72%), Gaps = 1/279 (0%) Query: 1 VHQNSQARIGIQLGHAGRKGSTRVAWEGMDEALPDHNWPLVSASSVPYL-ADGQIPEPMS 59 VH + RIG+QLGHAGR+GSTRV W+ D+ L + NWPLVSAS++PYL Q+P S Sbjct: 86 VHGHGDTRIGVQLGHAGRRGSTRVGWDTPDQPLAEGNWPLVSASALPYLPGRSQLPREAS 145 Query: 60 RAEMDEVREQFVAAARRAAAAGFDILELHCAHGYLLSSFLSPLTNRRIDDYGGSIENRAR 119 ++ +REQFV A RRAAAAGFD LEL HG+LLSSF+SPLTN+R D YGG++ENR R Sbjct: 146 LDDLARIREQFVEATRRAAAAGFDWLELQAGHGFLLSSFISPLTNQRTDAYGGALENRLR 205 Query: 120 YPLEVFRAVRAVWPEDKPMSVRLSCHDWAEGGNTPDDALAFAKLFKEAGADLIDCSSGQV 179 +PLEV AVRA WP P+SVR+SC DWA GG T D+A+ A+ GADL+D SSG+V Sbjct: 206 FPLEVLAAVRAAWPAHLPISVRISCTDWAPGGTTVDEAVEIARRLHLGGADLVDVSSGEV 265 Query: 180 WADDHPVYGRLYQTPFADKIRNEVGIATIAVGAISEADHANSIIAAGRADLCAIARPHLA 239 D PVYGRLYQTPFAD+IRNE + TIAVGAIS+AD N I+A+GRADLCA++R HLA Sbjct: 266 TPDQKPVYGRLYQTPFADRIRNEARVPTIAVGAISDADQVNGIVASGRADLCALSRAHLA 325 Query: 240 DPAWTLHEAAKIGVKQIAWPKQYLSGKSQYEANLERAAA 278 D AW L E+A++G + WP Y GK E + R A Sbjct: 326 DAAWVLRESARLGWHDVEWPPAYRFGKEPLERSFARGRA 364 >RSc0702 [C] COG1902 NADH Rso Ralstonia solanacearum Length = 370 Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 129/274 (47%), Positives = 163/274 (59%), Gaps = 2/274 (0%) Query: 1 VHQNSQARIGIQLGHAGRKGSTRVAWEGMDEALPDHN-WPLVSASSVPYLADGQIPEPMS 59 + ++Q IGIQ+ HAGRK S+ WEG P+ W + S++P + + P M+ Sbjct: 89 IRPHAQTPIGIQIAHAGRKASSARPWEGGALLPPESGGWETIGPSALPQRPEERPPRTMT 148 Query: 60 RAEMDEVREQFVAAARRAAAAGFDILELHCAHGYLLSSFLSPLTNRRIDDYGGSIENRAR 119 A++ VRE F A ARRA G +ELH AHGYLL FLSPL N+R D YGGS ENR R Sbjct: 149 EADLARVREAFAATARRAVGLGLAAIELHAAHGYLLHEFLSPLANQRTDAYGGSRENRMR 208 Query: 120 YPLEVFRAVRAVWPEDKPMSVRLSCHDWAEGGNTPDDALAFAKLFKEAGADLIDCSSGQV 179 YPLEVF AVRA P+D P+ VR+SC DW EGG T D++AFA+ + G D +D SSG V Sbjct: 209 YPLEVFEAVRAAVPDDIPVGVRVSCTDWVEGGWTLADSVAFAQALRARGCDWVDASSGGV 268 Query: 180 WADDHPVYGRLYQTPFADKIRNEVGIATIAVGAISEADHANSIIAAGRADLCAIARPHLA 239 YQ PFAD IR++ GI TIAVG I+E A +I+A GRADL A+ R L Sbjct: 269 SPLQQIPLSSGYQVPFADTIRHQAGIPTIAVGLINEPHEAEAILAEGRADLVAMGRAFLY 328 Query: 240 DPAWTLHEAAKIGVKQIAWPKQYLSGKSQYEANL 273 +P W AA +G I P QY ++ NL Sbjct: 329 NPHWAWTAAADLGAT-IKAPPQYWRAFPRHAKNL 361 >PA3723 [C] COG1902 NADH Pae Pseudomonas aeruginosa Length = 368 Score = 226 bits (575), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 118/256 (46%), Positives = 158/256 (61%), Gaps = 2/256 (0%) Query: 10 GIQLGHAGRKGSTRVAWEGMDEALP--DHNWPLVSASSVPYLADGQIPEPMSRAEMDEVR 67 G+QL HAGRK ST W G ++P D W V+ S++P+ PE +S A+++ + Sbjct: 97 GVQLAHAGRKASTWRPWLGKHGSVPIGDGGWIPVAPSAIPFDPQHTTPEALSEAQIEALV 156 Query: 68 EQFVAAARRAAAAGFDILELHCAHGYLLSSFLSPLTNRRIDDYGGSIENRARYPLEVFRA 127 + FV AA R+ AAGF + E+H AHGYLL FLSPL+N+R D YGG ENR R L+V A Sbjct: 157 QAFVRAAERSLAAGFKVAEVHAAHGYLLHQFLSPLSNQRRDQYGGCFENRIRLLLQVTAA 216 Query: 128 VRAVWPEDKPMSVRLSCHDWAEGGNTPDDALAFAKLFKEAGADLIDCSSGQVWADDHPVY 187 VR WP++ P+ VRLS DW E G PD+ + A+ K+ G DLID SSG A+ Sbjct: 217 VRKAWPQELPLFVRLSATDWVEDGWNPDETVELARHLKDLGVDLIDVSSGGTAANAEIPV 276 Query: 188 GRLYQTPFADKIRNEVGIATIAVGAISEADHANSIIAAGRADLCAIARPHLADPAWTLHE 247 G YQT FA++++ E GIA+ VG I+E A I+ G+ADL +AR L DP W LH Sbjct: 277 GPGYQTEFAERVKKEAGIASGTVGMITEPVQAEHILRTGQADLILLARELLRDPYWPLHA 336 Query: 248 AAKIGVKQIAWPKQYL 263 A ++ +Q+ WP QYL Sbjct: 337 ADELRNEQMPWPPQYL 352