BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0015.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1560 [G] COG0296 1,4-alpha-glucan branching enzyme Sty Salmon...    96   2e-20
PA2164 [G] COG0296 1,4-alpha-glucan branching enzyme Pae Pseudom...    87   2e-17
RSp0237 [G] COG0296 1,4-alpha-glucan branching enzyme Rso Ralsto...    81   1e-15
Rv1562c [G] COG0296 1,4-alpha-glucan branching enzyme Mtu Mycoba...    73   3e-13
MT1613 [G] COG0296 1,4-alpha-glucan branching enzyme MtC Mycobac...    72   4e-13

>STM1560 [G] COG0296 1,4-alpha-glucan branching enzyme Sty Salmonella
           typhimurium LT2
          Length = 594

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 7/130 (5%)

Query: 1   MLFMGEEWGATTPFPFFCDFKGDLANAVRAGRRKEFAWAYAKYGDDIPDPLADEAVRSAV 60
           +LFMGEE+G + PF FF DF GDLA AVR GR KEFA      G+++PDP A E  + + 
Sbjct: 428 LLFMGEEYGESRPFLFFTDFHGDLARAVREGRAKEFA---DHAGENVPDPNAPETFQRSK 484

Query: 61  LDWAALGHDPARARLALVRDLLAVRRQEIMPRLRGCRFGDAIV---AGDLLTAQWQMGDG 117
           L+W     +  +A LA  R+LL +R++ I+P L   R     V   A   +   W+   G
Sbjct: 485 LNWKQQHSEEGKAWLAFTRELLLLRQKHIVPLLSAARESSGTVLQTAPGFIAVSWRF-PG 543

Query: 118 GTLRLTANLS 127
           GTL L  N+S
Sbjct: 544 GTLSLALNIS 553


>PA2164 [G] COG0296 1,4-alpha-glucan branching enzyme Pae Pseudomonas
           aeruginosa
          Length = 583

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 13/149 (8%)

Query: 1   MLFMGEEWGATTPFPFFCDFKGDLANAVRAGRRKEFAWAYAKYGD-----DIPDPLADEA 55
           +LFMGEE  A  PF +F D +G+LA+AVR GRRKEF   + ++G+      +PDP A E 
Sbjct: 411 LLFMGEECAAREPFLYFTDHQGELADAVREGRRKEFG-EFGRFGEGATLASLPDPNAVET 469

Query: 56  VRSAVLDWAALGHDPARARLALVRDLLAVRRQEIMPRLRGCR-FGDAIVAGDLLTAQWQM 114
              +    A    DPA       R LL +R + ++PRLRG R  G   +AG  L+A+W++
Sbjct: 470 FERSRPGLADC--DPAWR--GFYRQLLEIRHEHLIPRLRGARSLGVTTIAGAALSARWRL 525

Query: 115 GDGGTLRLTANLSDRDIADGPEPKGTAIW 143
           GDG   R+  N S   +    EP   A W
Sbjct: 526 GDGSDWRIDFNPS--PLEAEVEPPAAATW 552


>RSp0237 [G] COG0296 1,4-alpha-glucan branching enzyme Rso Ralstonia
           solanacearum
          Length = 622

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 73/142 (51%), Gaps = 15/142 (10%)

Query: 1   MLFMGEEWGATTPFPFFCDFKGDLANAVRAGRRKEFAWAYAKYGDD-----IPDPLADEA 55
           +LFMGEEWG   PF +F    G LA AVR GRR+EFA  +A + D      IPDP  DE 
Sbjct: 438 LLFMGEEWGCLRPFLYFTSHHGALAEAVREGRRREFA-RFAAFADPHQRERIPDP-NDE- 494

Query: 56  VRSAVLDWAALGHDPARAR----LALVRDLLAVRRQEIMPRLRGCRFGDAIVAGDL-LTA 110
                LD      DP        L   + LLA+R   I+PRL G R  DA+  G     A
Sbjct: 495 --RTFLDSQPGSTDPTLPEQLDWLNRTQGLLALRHARIVPRLPGTRALDAVPLGATGALA 552

Query: 111 QWQMGDGGTLRLTANLSDRDIA 132
           +W++GDG  L L  NL  + +A
Sbjct: 553 RWRLGDGSVLTLAINLGTQPVA 574


>Rv1562c [G] COG0296 1,4-alpha-glucan branching enzyme Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 580

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 8/92 (8%)

Query: 1   MLFMGEEWGATTPFPFFCDF-KGDLANAVRAGRRKEFA---WAYAKYGDDIPDPLADEAV 56
           MLFMGEEWGA++PF FFC   + +LA++  AGR++EFA   WA     DDIPDP   +  
Sbjct: 415 MLFMGEEWGASSPFQFFCSHPEPELAHSTVAGRKEEFAEHGWA----ADDIPDPQDPQTF 470

Query: 57  RSAVLDWAALGHDPARARLALVRDLLAVRRQE 88
           +   L+WA  G           RDL+A+R  E
Sbjct: 471 QRCKLNWAEAGSGEHARLHRFYRDLIALRHNE 502


>MT1613 [G] COG0296 1,4-alpha-glucan branching enzyme MtC Mycobacterium
           tuberculosis CDC1551
          Length = 609

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 8/92 (8%)

Query: 1   MLFMGEEWGATTPFPFFCDF-KGDLANAVRAGRRKEFA---WAYAKYGDDIPDPLADEAV 56
           MLFMGEEWGA++PF FFC   + +LA++  AGR++EFA   WA     DDIPDP   +  
Sbjct: 444 MLFMGEEWGASSPFQFFCSHPEPELAHSTVAGRKEEFAEHGWA----ADDIPDPQDPQTF 499

Query: 57  RSAVLDWAALGHDPARARLALVRDLLAVRRQE 88
           +   L+WA  G           RDL+A+R  E
Sbjct: 500 QRCKLNWAEAGSGEHARLHRFYRDLIALRHNE 531