BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0019.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1766 [S] COG2261 Predicted membrane protein Sme Sinorhizobium...   117   9e-27
RSc1077 [S] COG2261 Predicted membrane protein Rso Ralstonia sol...    88   5e-18
PA5424 [S] COG2261 Predicted membrane protein Pae Pseudomonas ae...    61   6e-10

>SMa1766 [S] COG2261 Predicted membrane protein Sme Sinorhizobium meliloti
          Length = 83

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 70/82 (85%)

Query: 1  MSILWTIIIGFVAGVIAKFIMPGDNEPSGFILTAILGIVGAFVATYLGQALGWYRPGEGA 60
          M I+WTIIIGFVAG++AK I+PG+NEP GF+LT ILGIVGAFVA+YLGQALGWY   EGA
Sbjct: 1  MGIIWTIIIGFVAGIVAKLIVPGENEPKGFVLTTILGIVGAFVASYLGQALGWYNANEGA 60

Query: 61 GLVGAVLGAIIVLFVYGLFAGR 82
          G +GA++GA+IVL ++G  A R
Sbjct: 61 GFIGAIVGAVIVLLLWGAVARR 82


>RSc1077 [S] COG2261 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 82

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 62/84 (73%), Gaps = 2/84 (2%)

Query: 1  MSILWTIIIGFVAGVIAKFIMPGDNEPSGFILTAILGIVGAFVATYLGQALGWYRPGEGA 60
          M IL TI+IGF+AG++A++I PG   PSGFILT +LGI GA  AT+LGQ L  YRPG+ A
Sbjct: 1  MHILITILIGFLAGLVARWITPGSG-PSGFILTTVLGIAGALAATFLGQLLHLYRPGQSA 59

Query: 61 GLVGAVLGAIIVLFVYGLFAGRQR 84
          G +GAV+GA+++L  Y   A R R
Sbjct: 60 GFIGAVIGAVVLLVAYHAIA-RNR 82


>PA5424 [S] COG2261 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 81

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 62/78 (79%), Gaps = 1/78 (1%)

Query: 1  MSILWTIIIGFVAGVIAKFIMPGDNEPSGFILTAILGIVGAFVATYLGQALGWYRPGEGA 60
          M ++ TII+G + G++A+F+ PGD +  G+I+T +LGI G+ +ATY GQA+G+Y+ G+ A
Sbjct: 1  MGLIGTIIVGLIVGLVARFLKPGD-DSMGWIMTILLGIGGSLLATYGGQAIGFYQAGQAA 59

Query: 61 GLVGAVLGAIIVLFVYGL 78
          G +GAV+GA+++L +YGL
Sbjct: 60 GFIGAVVGAVVLLVIYGL 77