BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0016.p         (64 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl3376 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefa...   102   1e-22
BMEI0518 [K] COG1278 Cold shock proteins Bme Brucella melitensis      100   6e-22
SMc04318 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti    99   2e-21
msr6259 [K] COG1278 Cold shock proteins Mlo Mesorhizobium loti         98   4e-21
SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti    98   5e-21

>AGl3376 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 98

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 56/64 (87%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN  KGFGFIQP NG  DVFVHISAVERAGM +L++GQ +SY++V DRR+GKS+A+N
Sbjct: 35 VKWFNATKGFGFIQPDNGGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRRSGKSSADN 94

Query: 61 LRAA 64
          L+AA
Sbjct: 95 LQAA 98


>BMEI0518 [K] COG1278 Cold shock proteins Bme Brucella melitensis
          Length = 101

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 54/64 (84%)

Query: 1   VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
           VKWFNT KGFGFIQP  G  DVFVHISAV+RAG+ TL EGQ +SY++V DRR+G+S+A+N
Sbjct: 38  VKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSSADN 97

Query: 61  LRAA 64
           L AA
Sbjct: 98  LVAA 101


>SMc04318 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti
          Length = 69

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 55/64 (85%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN+ KGFGFIQP +G+ DVFVH SAVERAGM +L EGQ ++YD+V D ++GKS+A+N
Sbjct: 6  VKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTKSGKSSADN 65

Query: 61 LRAA 64
          LRAA
Sbjct: 66 LRAA 69


>msr6259 [K] COG1278 Cold shock proteins Mlo Mesorhizobium loti
          Length = 70

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN+ KGFGFIQP NG  DVFVHISAVERAG+ TL++GQ ++Y+V  DRRTGKS+A N
Sbjct: 6  VKWFNSTKGFGFIQPDNGGQDVFVHISAVERAGLSTLTDGQKINYEVEQDRRTGKSSAGN 65

Query: 61 LRAA 64
          L  A
Sbjct: 66 LSKA 69


>SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti
          Length = 69

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 55/63 (87%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN+ KGFGFIQP +G+ DVFVHISAVERAG+ TL +GQ +S+++  DRR+GK++A+N
Sbjct: 6  VKWFNSTKGFGFIQPDDGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRRSGKTSADN 65

Query: 61 LRA 63
          LRA
Sbjct: 66 LRA 68