BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0226.0014.p (389 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0492 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melit... 671 0.0 CC1110 Non COG 556 e-158 STM0857 [I] COG1960 Acyl-CoA dehydrogenases Sty Salmonella typhi... 524 e-148 PA0879 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 521 e-147 CC2328 Non COG 350 4e-96 >BMEII0492 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melitensis Length = 395 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/382 (81%), Positives = 349/382 (91%) Query: 8 IDDHSDIRDAVAKLCAQFPGEYWRKLDRQMAYPKEFVDALTEAGYLSVLIPEEYGGAGLK 67 +DD++DIR+AV KLC +FPGEYWRK+DR+MAYP EFV+ALTEAG+LS+LIPEEYGGAGL Sbjct: 14 VDDYTDIREAVFKLCQRFPGEYWRKIDREMAYPNEFVNALTEAGWLSILIPEEYGGAGLP 73 Query: 68 LSAAAAILEEIQRAGCNGGGCHAQMYTMGTVLRHGNDAQKAKYLPKVATGELRLQAFGVT 127 LSAAAA+LEEIQ++GCNGG CHAQMYTMGT+LRHG+D QKA YLPK+A+GELRLQAFGVT Sbjct: 74 LSAAAAVLEEIQKSGCNGGACHAQMYTMGTLLRHGSDEQKACYLPKIASGELRLQAFGVT 133 Query: 128 EPTSGTDTSSLKTFARREGDHYVVNGQKIWTSRAEYSDLMVLLARTTPKEQSKKRTDGLS 187 EPTSGTDT +LKT ARREGD +++NGQKIWTSRAEYSDLM+LLART+P K+TDGLS Sbjct: 134 EPTSGTDTGALKTTARREGDEFIINGQKIWTSRAEYSDLMLLLARTSPLTDGMKKTDGLS 193 Query: 188 VFIVDMREVKGKGLEIRPIRTMMNHATTEVFFTDMKVPAENLIGEEGKGFRYILSGMNAE 247 V IVDM + K GL IRPIRTMMNHATTEVFF +++VP NLIGEEGKGFRYILSGMNAE Sbjct: 194 VLIVDMAKAKNNGLTIRPIRTMMNHATTEVFFDNLRVPVSNLIGEEGKGFRYILSGMNAE 253 Query: 248 RILIAAECVGDAKWFIAKATSYAKERSVFGRPIGQNQGIQFPIAKAYASMRAAELMVKEA 307 RILIAAEC+GDAKWF K+ +YAKERS+FGRPIGQNQGIQFPIAKAYA+MRAAELMV+ A Sbjct: 254 RILIAAECIGDAKWFTQKSVNYAKERSIFGRPIGQNQGIQFPIAKAYANMRAAELMVQSA 313 Query: 308 TRKYEAGLDCGAEANMAKMLAADASWEAANACVQTHGGFGFAEEYDVERKFRETRLYQVA 367 YEAG + GAEANMAKMLAADAS+EAANACVQTHGGFGFAEEYDVERKFRETRLYQVA Sbjct: 314 LALYEAGQNPGAEANMAKMLAADASFEAANACVQTHGGFGFAEEYDVERKFRETRLYQVA 373 Query: 368 PISTNLILSYVAEHVLGMPRSY 389 PISTNLILSY+AEHVLGMPRSY Sbjct: 374 PISTNLILSYIAEHVLGMPRSY 395 >CC1110 Non COG Length = 387 Score = 556 bits (1432), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/376 (70%), Positives = 312/376 (82%) Query: 14 IRDAVAKLCAQFPGEYWRKLDRQMAYPKEFVDALTEAGYLSVLIPEEYGGAGLKLSAAAA 73 +R V LC FP YWR LDR+ AYP +FV A+T+AG L VLIPEEYGG GL L+AAAA Sbjct: 12 LRHTVRSLCRDFPPPYWRGLDREKAYPTDFVAAMTKAGLLGVLIPEEYGGGGLGLTAAAA 71 Query: 74 ILEEIQRAGCNGGGCHAQMYTMGTVLRHGNDAQKAKYLPKVATGELRLQAFGVTEPTSGT 133 ILEE+ +G N HAQMYTMGTVLRHG+ AQK +LP++A G +RLQAFGVTEPT+GT Sbjct: 72 ILEEVHASGGNAAALHAQMYTMGTVLRHGSTAQKETWLPRIADGSIRLQAFGVTEPTAGT 131 Query: 134 DTSSLKTFARREGDHYVVNGQKIWTSRAEYSDLMVLLARTTPKEQSKKRTDGLSVFIVDM 193 DT+S+ TFARREGD YV+NGQK+WTSRAE+SDLMVLLARTTPK+Q ++ DGLSVF+VDM Sbjct: 132 DTTSISTFARREGDTYVINGQKVWTSRAEHSDLMVLLARTTPKDQVTRKADGLSVFLVDM 191 Query: 194 REVKGKGLEIRPIRTMMNHATTEVFFTDMKVPAENLIGEEGKGFRYILSGMNAERILIAA 253 R G+GL I+PI TM+NHATTEVFF ++ +PA++LIGEEGKGFRYIL GMNAERILI A Sbjct: 192 RAALGQGLTIKPIATMLNHATTEVFFDNLVIPADSLIGEEGKGFRYILDGMNAERILIGA 251 Query: 254 ECVGDAKWFIAKATSYAKERSVFGRPIGQNQGIQFPIAKAYASMRAAELMVKEATRKYEA 313 EC+GDA W I KA YA R VFGRPIGQNQG+QFPIA+AYA AA L + +A +Y+A Sbjct: 252 ECLGDAAWLIGKARDYANSRVVFGRPIGQNQGVQFPIARAYAQTHAARLTIYDAAARYDA 311 Query: 314 GLDCGAEANMAKMLAADASWEAANACVQTHGGFGFAEEYDVERKFRETRLYQVAPISTNL 373 G CG +AN+ KMLA++ASW AA+ C+QTHGGFGFAEEYD+ERKFRETRLYQVAPISTNL Sbjct: 312 GQPCGEQANIGKMLASEASWAAADMCLQTHGGFGFAEEYDIERKFRETRLYQVAPISTNL 371 Query: 374 ILSYVAEHVLGMPRSY 389 IL+YVAEHVLG+PRSY Sbjct: 372 ILAYVAEHVLGLPRSY 387 >STM0857 [I] COG1960 Acyl-CoA dehydrogenases Sty Salmonella typhimurium LT2 Length = 387 Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust. Identities = 236/381 (61%), Positives = 302/381 (79%) Query: 9 DDHSDIRDAVAKLCAQFPGEYWRKLDRQMAYPKEFVDALTEAGYLSVLIPEEYGGAGLKL 68 D + DIRDAV LC++F +Y RK+D AYP+EFV+ LT+AG+L+ LIPEE+GG+GL L Sbjct: 7 DKYQDIRDAVRSLCSEFDDKYHRKIDEAKAYPEEFVNKLTKAGWLAALIPEEFGGSGLGL 66 Query: 69 SAAAAILEEIQRAGCNGGGCHAQMYTMGTVLRHGNDAQKAKYLPKVATGELRLQAFGVTE 128 + A+ I+EEI R+G N G CH QMY M T+LRHG+D QK +LP++ATGE RLQ+ GVTE Sbjct: 67 TEASIIMEEINRSGGNSGACHGQMYNMNTLLRHGSDKQKEFWLPRIATGEWRLQSMGVTE 126 Query: 129 PTSGTDTSSLKTFARREGDHYVVNGQKIWTSRAEYSDLMVLLARTTPKEQSKKRTDGLSV 188 PT+GTDT+ +KT A + D YV+NGQK+W SR ++SD M+LL RTTP K++++G+S+ Sbjct: 127 PTAGTDTTRIKTTAVKREDRYVINGQKVWISRVQHSDWMILLVRTTPLANVKRKSEGMSI 186 Query: 189 FIVDMREVKGKGLEIRPIRTMMNHATTEVFFTDMKVPAENLIGEEGKGFRYILSGMNAER 248 F+VD++E G+ +RPI M+NH T E+FF ++++P ENLIGEEG GF YIL G+NAER Sbjct: 187 FMVDIKEAMKNGMTVRPIPNMVNHETNELFFDNLEIPEENLIGEEGMGFHYILDGLNAER 246 Query: 249 ILIAAECVGDAKWFIAKATSYAKERSVFGRPIGQNQGIQFPIAKAYASMRAAELMVKEAT 308 LIAAEC+GD WF+ + T Y ER VFGRPIGQNQG+QFPIA+A+ ++ AA LM +A Sbjct: 247 TLIAAECIGDGYWFMDRVTRYTCEREVFGRPIGQNQGVQFPIAEAFIAVEAANLMRFKAC 306 Query: 309 RKYEAGLDCGAEANMAKMLAADASWEAANACVQTHGGFGFAEEYDVERKFRETRLYQVAP 368 ++ LDCGA+ANMAK LAA ASWEAANAC+Q HGG+GFA EYD+ERKFRETRLYQVAP Sbjct: 307 ELFDQHLDCGAQANMAKYLAAKASWEAANACLQFHGGYGFACEYDIERKFRETRLYQVAP 366 Query: 369 ISTNLILSYVAEHVLGMPRSY 389 ISTNLILSY+AEHVL MPRS+ Sbjct: 367 ISTNLILSYIAEHVLEMPRSF 387 >PA0879 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 386 Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust. Identities = 247/385 (64%), Positives = 318/385 (82%) Query: 5 DQNIDDHSDIRDAVAKLCAQFPGEYWRKLDRQMAYPKEFVDALTEAGYLSVLIPEEYGGA 64 + N ++ + IR+ V LCA+F YWR++D Q +P+ FV ALT+AG+LS +IPEEYGG+ Sbjct: 2 NPNSEELNAIREGVRALCAEFDAAYWRRIDEQRGFPEAFVKALTDAGWLSAMIPEEYGGS 61 Query: 65 GLKLSAAAAILEEIQRAGCNGGGCHAQMYTMGTVLRHGNDAQKAKYLPKVATGELRLQAF 124 GL L+ A+ ILEE+ R G N G H QMY M T+LR+G++AQK YLPK+A+GELRLQ+ Sbjct: 62 GLGLAEASVILEEVNRCGGNSGTVHGQMYNMFTLLRNGSEAQKRFYLPKLASGELRLQSM 121 Query: 125 GVTEPTSGTDTSSLKTFARREGDHYVVNGQKIWTSRAEYSDLMVLLARTTPKEQSKKRTD 184 GVTEPT+GTDT+ +KT A R+GD YV+NGQK+W SR ++SDLM+LLARTTP + K++++ Sbjct: 122 GVTEPTTGTDTTKIKTTAVRKGDRYVINGQKVWISRIQHSDLMILLARTTPLAEVKRKSE 181 Query: 185 GLSVFIVDMREVKGKGLEIRPIRTMMNHATTEVFFTDMKVPAENLIGEEGKGFRYILSGM 244 G+S+F+VD+RE GKGL ++PI M+NH T E+FF ++++PA++LIGEEGKGFRYIL G+ Sbjct: 182 GMSIFLVDLREAIGKGLTVQPIANMVNHETNELFFDNLEIPADSLIGEEGKGFRYILDGL 241 Query: 245 NAERILIAAECVGDAKWFIAKATSYAKERSVFGRPIGQNQGIQFPIAKAYASMRAAELMV 304 NAER LIAAEC+GD +WFI KA+ YA++R VFGRPIGQNQG+QFPIA+A+ + AA+LM Sbjct: 242 NAERTLIAAECIGDGRWFIDKASHYARDRVVFGRPIGQNQGVQFPIAEAHIEVEAADLMR 301 Query: 305 KEATRKYEAGLDCGAEANMAKMLAADASWEAANACVQTHGGFGFAEEYDVERKFRETRLY 364 A ++Y+AGL+ GA ANMAK LAA ASWEAANAC+QTHGGFGFA EYDVERKFRETRLY Sbjct: 302 WRACQEYDAGLNAGASANMAKYLAAKASWEAANACLQTHGGFGFACEYDVERKFRETRLY 361 Query: 365 QVAPISTNLILSYVAEHVLGMPRSY 389 QVAPISTNLILSYVAEH+L +PRS+ Sbjct: 362 QVAPISTNLILSYVAEHLLELPRSF 386 >CC2328 Non COG Length = 387 Score = 350 bits (897), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 174/386 (45%), Positives = 256/386 (66%), Gaps = 11/386 (2%) Query: 9 DDHSDIRDAVAKLCAQFPGEYWRKLDRQMAYPKEFVDALTEAGYLSVLIPEEYGGAGLKL 68 ++ IR+ VAK+CA F EYWR+ D +P+ FV A+ E G+L V +PE GGAGL L Sbjct: 8 EEQEAIREGVAKVCAAFDDEYWRRTDETGEFPEAFVAAIAEGGWLGVAMPENVGGAGLGL 67 Query: 69 SAAAAILEEIQRAGCNGGGC---HAQMYTMGTVLRHGNDAQKAKYLPKVATGELRLQAFG 125 + AA +++ + ++G G H ++ +++ G+D Q+ + LP++ +GE ++ F Sbjct: 68 TEAAVMMQSVAQSGAGFSGASAIHLNIFGPMPLVKFGSDEQRNRLLPRIISGEDKM-CFA 126 Query: 126 VTEPTSGTDTSSLKTFARREGDHYVVNGQKIWTSRAEYSDLMVLLARTTPKEQSKKRTDG 185 VTEP SG DTSSL+T A + Y +NG+KIWT+ A+ ++ ++++ARTTPK+Q K G Sbjct: 127 VTEPNSGLDTSSLETRAEKVEGGYRLNGRKIWTTGAQRANKILIIARTTPKDQCAKPHQG 186 Query: 186 LSVFIVDMREVKGKGLEIRPIRTMMNHAT--TEVFFTDMKVPAENLIGEEGKGFRYILSG 243 LS+F D + E +PI M A +F D+ VPA++L+GEEGKGF+Y+L G Sbjct: 187 LSLFYTDRENI-----EAKPIPKMGRKAVECNMLFIEDLFVPAQDLVGEEGKGFQYLLHG 241 Query: 244 MNAERILIAAECVGDAKWFIAKATSYAKERSVFGRPIGQNQGIQFPIAKAYASMRAAELM 303 +N ER+L A E +G + +AKAT+YA ER VFGRPIGQNQG+ P+AK++A + AA L+ Sbjct: 242 LNPERVLFAVEAIGLGRAALAKATTYANERIVFGRPIGQNQGVAHPLAKSWAELEAANLL 301 Query: 304 VKEATRKYEAGLDCGAEANMAKMLAADASWEAANACVQTHGGFGFAEEYDVERKFRETRL 363 +A Y+ G +CGAEAN AK L A+A + A A V HGG G+A+EYDVER FRE + Sbjct: 302 AFKAASLYDQGKECGAEANAAKYLGAEAGFHACEASVLAHGGMGYAKEYDVERYFREAMI 361 Query: 364 YQVAPISTNLILSYVAEHVLGMPRSY 389 ++AP+S +IL+++AE VLG+P+SY Sbjct: 362 ARIAPVSREMILNFIAERVLGLPKSY 387