BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0226.0003.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1119 [K] COG1733 Predicted transcriptional regulators Rso Ral...   115   2e-26
PA2713 [K] COG1733 Predicted transcriptional regulators Pae Pseu...    84   8e-17
CC0895 Non COG                                                         76   2e-14
PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseu...    74   9e-14
BH0508 [K] COG1733 Predicted transcriptional regulators Bha Baci...    68   5e-12

>RSp1119 [K] COG1733 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 162

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 79/130 (60%), Gaps = 1/130 (0%)

Query: 1   MRELFARNHRFEEIQAQSGGTPQMITARLKKLEADGLVTRQVYNKRPLRHEYHLTEKGEA 60
           +RELF    RFEE QAQ+G +  +++ RLK+LEADG+V R +Y+ RP RHEY LT KG  
Sbjct: 29  LRELFLGVKRFEEFQAQTGMSSHLLSTRLKRLEADGIVVRHLYSDRPPRHEYRLTSKGLD 88

Query: 61  FFPVLMALRAWGETWCK-SPREGRAMSYTHLVCGKPAGLGPVCESCGEPVHRADMVGERT 119
           F+P+L++L++WGE W     +   A++ TH  CG   GL  VC +C EP    D      
Sbjct: 89  FYPLLLSLKSWGEKWGGFKAKTAPALTITHRQCGHETGLKLVCPACDEPFGPKDATVTLG 148

Query: 120 PKYQRERDER 129
             ++ ER  R
Sbjct: 149 ASFKAERQAR 158


>PA2713 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 159

 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 61/122 (50%), Gaps = 1/122 (0%)

Query: 1   MRELFARNHRFEEIQAQSGGTPQMITARLKKLEADGLVTRQVYNKRPLRHEYHLTEKGEA 60
           +R  F    RF+E QA  G T Q++  RL +L   G + +  Y +RP R+EY LTE G  
Sbjct: 29  LRNCFLGMRRFDEFQASLGVTRQVLADRLSRLVEAGALKKVPYQERPPRYEYRLTEMGHD 88

Query: 61  FFPVLMALRAWGETWCKSPREGRAMSYTHLVCGKPAGLGPVCESCGEPVHRADMVGERTP 120
             PVL+AL  WG+ W    R G  + Y H  CG       VC  CGEPV   D+     P
Sbjct: 89  LHPVLLALANWGDRWLDEGR-GAPVEYVHKACGHKFRPTMVCPECGEPVGSRDVTAVPGP 147

Query: 121 KY 122
            +
Sbjct: 148 GF 149


>CC0895 Non COG
          Length = 167

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 5/116 (4%)

Query: 1   MRELFARNHRFEEIQAQSGGTPQMITARLKKLEADGLVTRQVYNKRPLRHEYHLTEKGEA 60
           +R+ FA   RFE+ Q + G    ++ ARLK L + G++  + Y++RP RHEY LTEKG A
Sbjct: 30  LRDAFAGVKRFEQWQDRLGVARNVLAARLKTLVSHGVMETRRYSERPPRHEYWLTEKGLA 89

Query: 61  FFPVLMALRAWGETWCKSPREGRAMSYTHLVCGKPAGLGPV--CESCGEPVHRADM 114
             PVL+ +  WG+      R+   + + H  CG      PV  CE+CG+ V R D+
Sbjct: 90  LSPVLLTMAEWGDRHVYG-RDKSPVLFRHKTCG--CAFHPVLACEACGQVVDRRDI 142


>PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 157

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 1   MRELFARNHRFEEIQAQSGGTPQMITARLKKLEADGLVTRQVYNKRPLRHEYHLTEKGEA 60
           +R+ F    RF++ +   G T  ++  RLK+L    ++ +  Y +RPLR EY LTEKG  
Sbjct: 29  LRDCFLGVRRFDDFERSLGVTRHVLADRLKRLVEAEILAKVPYQERPLREEYRLTEKGME 88

Query: 61  FFPVLMALRAWGETWCKSPREGRAMSYTHLVCGKPAGLGPVCESCGEPVHRADM 114
            +P +++L  WG+       EG  + + H  CG+      VC  CGEP+H  D+
Sbjct: 89  LYPAILSLVNWGDRHLAGV-EGPPLEHVHKHCGQHMHGVLVCSECGEPLHARDV 141


>BH0508 [K] COG1733 Predicted transcriptional regulators Bha Bacillus
           halodurans
          Length = 102

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 1   MRELFARNHRFEEIQAQ-SGGTPQMITARLKKLEADGLVTRQVYNKRPLRHEYHLTEKGE 59
           +R L A   RF++I+AQ  G + +++T R+K+LE   +V R VY ++P+R EY LTEKG+
Sbjct: 26  IRVLLAGPKRFKDIKAQIPGMSDRILTERMKELEQLEVVIRHVYPEKPVRIEYELTEKGK 85

Query: 60  AFFPVLMALRAWGETWC 76
              PV+ A++ WGE W 
Sbjct: 86  DLTPVIEAIQQWGEKWA 102