BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0224.0039.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc00681 [K] COG1522 Transcriptional regulators Sme Sinorhizobiu...   136   1e-32
CC0805 Non COG                                                        127   6e-30
BMEI0447 [K] COG1522 Transcriptional regulators Bme Brucella mel...   126   1e-29
lrp [K] COG1522 Transcriptional regulators Eco Escherichia coli K12   113   1e-25
Zlrp [K] COG1522 Transcriptional regulators EcZ Escherichia coli...   113   1e-25

>SMc00681 [K] COG1522 Transcriptional regulators Sme Sinorhizobium meliloti
          Length = 154

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 1   VFVEVLLDKTTPDVFEKFARAVQTAPEVLECHMVAGGFDYLVKARVANMTAYRRFLGETL 60
           VF+EV+LDKTTP+VF++FA A++ AP VLECHMVAGGFDYLVK R  +M AYR FLG+ L
Sbjct: 68  VFIEVMLDKTTPEVFDQFAAAIKQAPAVLECHMVAGGFDYLVKTRFEDMAAYRNFLGQVL 127

Query: 61  LALPGVRETRTYAVMEEVKRDAPLPV 86
             LPGV+ETRTYAVMEE+K D PLP+
Sbjct: 128 WTLPGVKETRTYAVMEEIKNDGPLPL 153


>CC0805 Non COG
          Length = 155

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   VFVEVLLDKTTPDVFEKFARAVQTAPEVLECHMVAGGFDYLVKARVANMTAYRRFLGETL 60
           +FVEV+L++TT DVFE+F  AV+ APE+LECHMVAGGFDYL+KARV +M AYR FLG+ L
Sbjct: 70  IFVEVVLERTTGDVFEEFGAAVRRAPEILECHMVAGGFDYLIKARVRDMEAYRSFLGDIL 129

Query: 61  LALPGVRETRTYAVMEEVKRDAPLPV 86
           + +PGVRETRTYAV+EEVK    LP+
Sbjct: 130 VKMPGVRETRTYAVLEEVKSTVQLPL 155


>BMEI0447 [K] COG1522 Transcriptional regulators Bme Brucella melitensis
          Length = 154

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   VFVEVLLDKTTPDVFEKFARAVQTAPEVLECHMVAGGFDYLVKARVANMTAYRRFLGETL 60
           VF+E+ LD+TTP+VFE F+   ++ P++LECHMVAGGFDYLVKARV++M  YRRFL E L
Sbjct: 69  VFIEIKLDRTTPEVFETFSTFTRSNPDILECHMVAGGFDYLVKARVSDMDHYRRFLSEAL 128

Query: 61  LALPGVRETRTYAVMEEVKRDAPLPV 86
           L+LPGVRE+ TYAVMEEVK  A + V
Sbjct: 129 LSLPGVRESHTYAVMEEVKETADIAV 154


>lrp [K] COG1522 Transcriptional regulators Eco Escherichia coli K12
          Length = 164

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 66/86 (76%)

Query: 1   VFVEVLLDKTTPDVFEKFARAVQTAPEVLECHMVAGGFDYLVKARVANMTAYRRFLGETL 60
           VFVE+ L++  PDVFE+F  AVQ   E+ ECH+V+G FDYL+K RV +M+AYR+ LGETL
Sbjct: 76  VFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETL 135

Query: 61  LALPGVRETRTYAVMEEVKRDAPLPV 86
           L LPGV +TRTY VMEEVK+   L +
Sbjct: 136 LRLPGVNDTRTYVVMEEVKQSNRLVI 161


>Zlrp [K] COG1522 Transcriptional regulators EcZ Escherichia coli O157:H7
           EDL933
          Length = 164

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 66/86 (76%)

Query: 1   VFVEVLLDKTTPDVFEKFARAVQTAPEVLECHMVAGGFDYLVKARVANMTAYRRFLGETL 60
           VFVE+ L++  PDVFE+F  AVQ   E+ ECH+V+G FDYL+K RV +M+AYR+ LGETL
Sbjct: 76  VFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETL 135

Query: 61  LALPGVRETRTYAVMEEVKRDAPLPV 86
           L LPGV +TRTY VMEEVK+   L +
Sbjct: 136 LRLPGVNDTRTYVVMEEVKQSNRLVI 161