BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0224.0025.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0662 [S] COG3762 Predicted membrane protein Rso Ralstonia sol...   109   2e-24
PM0784 [S] COG3762 Predicted membrane protein Pmu Pasteurella mu...    81   1e-15
mll4125 [S] COG3762 Predicted membrane protein Mlo Mesorhizobium...    70   3e-12

>RSc0662 [S] COG3762 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 173

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 2   GIKRIGKHLLEHRWRVRRDFPPCVLDAIERAIKAGEATHSGQIRFVVEGALDGVPLFRNQ 61
           G +R  +HL       RR F P  L  +E A++ GE  H G++R V+E +L     +   
Sbjct: 9   GARRALRHLTTTTAHARRAFSPADLRQLEAAVREGERRHRGEVRIVIEASLPVRDAWAGV 68

Query: 62  PARERALDVFSHLRIWDTDHNNGVLIYLLLADRDVEIVADRGVDAKVGHAGWEAICRTME 121
             R+RA  +F  L +W+T  + GVL+YL LAD  VEI+ADRG+ A+V    W AIC T+ 
Sbjct: 69  TPRQRARTLFGLLEVWNTHEHVGVLLYLNLADHAVEILADRGIAARVEPHAWRAICETIT 128

Query: 122 TDFRAGRFEQGVIKGIEAVSRELAKYFPPPAGP--NELPDKPVVI 164
             F  G     V++ +  +   LA +FP    P  NEL DKP+V+
Sbjct: 129 HGFAQGVAIGPVLEALGQIHAVLAAHFPSDGAPRANELADKPLVL 173


>PM0784 [S] COG3762 Predicted membrane protein Pmu Pasteurella multocida
          Length = 149

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 3/136 (2%)

Query: 29  IERAIKAGEATHSGQIRFVVEGALDGVPLFRNQPARERALDVFSHLRIWDTDHNNGVLIY 88
           +E+AI   E   S ++R  VE  +      +     ERAL +F  L +  T+ +NGVLIY
Sbjct: 14  VEKAIFQLEKQTSAELRVYVERKIPRKA--QVNTGFERALQIFDELGMQATEAHNGVLIY 71

Query: 89  LLLADRDVEIVADRGVDAKVGHAGWEAICRTMETDFRAGRFEQGVIKGIEAVSRELAKYF 148
           +        I+ D+G+   VG A W+  C  M + FR   + QG+I  I+ +++ELA YF
Sbjct: 72  VAFRAHQCAIIGDQGIHQYVGDAFWQQQCDLMISHFRQNAYTQGIIVAIDNIAKELANYF 131

Query: 149 P-PPAGPNELPDKPVV 163
           P  P   NEL ++ ++
Sbjct: 132 PIQPDDKNELDNEVII 147


>mll4125 [S] COG3762 Predicted membrane protein Mlo Mesorhizobium loti
          Length = 228

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 58  FRNQPARERALDVFSHLRIWDTDHNNGVLIYLLLADRDVEIVADRGVDAKVGHAGWEAIC 117
            R Q A   A+  F    +  T    GVLI++ +A+R  E+VAD G+DAKVG   W+ + 
Sbjct: 121 LRYQAAHANAIKQFLARNVHRTTARTGVLIFVSIAERYAEVVADSGIDAKVGQHVWDGVV 180

Query: 118 RTMETDFRAGRFEQGVIKGIEAVSRELAKYFPPPAG-PNELPDKPVVI 164
           R +       R   G +K IE V   LA++FP  +G  NEL D  V I
Sbjct: 181 RDLTAHAGDDRLADGFVKAIEQVGSVLAEHFPVTSGDTNELDDHLVEI 228