BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0223.0011.p (356 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 436 e-122 mlr5222 Non COG 404 e-112 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 142 1e-33 SP0751 [E] COG4177 ABC-type branched-chain amino acid transport ... 108 2e-23 RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport... 104 3e-22 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust. Identities = 234/312 (75%), Positives = 269/312 (86%) Query: 25 ITFGVIPLAGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNL 84 I + V+P G+ YL +A+L PFLAL+LA VGLN+LTGYAGQVSLGSAAF+AVGA+AAYN Sbjct: 26 IAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMAVGAFAAYNF 85 Query: 85 HLRLPELPLLLDLVLAGLVAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWF 144 LR+ LPL + +VLAGL AA IGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKF W Sbjct: 86 DLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFSWL 145 Query: 145 SNDNPSGVIDAPALTIAGYSFTSAAGRYLFSLAVVTVATILTLLLLQSQTGRNFIAVRDH 204 SN++ SGVIDAPAL++AG SF GRYLF+L VT T L L+ SQTGRNFIAVRD+ Sbjct: 146 SNESASGVIDAPALSLAGISFEGPVGRYLFALTTVTALTFLAYRLVSSQTGRNFIAVRDN 205 Query: 205 EIAAKVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIII 264 E AA++IGVP+LRTKLLAF +SSF+IGVAGV+WAFAYLRTVEPAGFNLDRSFQILFI+II Sbjct: 206 ETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFNLDRSFQILFIVII 265 Query: 265 GGLASLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEMSQRIVIGALIIAFLIAEP 324 GGLAS+RGAF GAA IVVFPL+LSRLG+ LLG VFDSGVL+M+QRIVIGALII FLI EP Sbjct: 266 GGLASIRGAFFGAALIVVFPLVLSRLGSLLLGDVFDSGVLDMTQRIVIGALIILFLILEP 325 Query: 325 RGLIALWDRFRA 336 GL++LWDR ++ Sbjct: 326 DGLVSLWDRLKS 337 >mlr5222 Non COG Length = 346 Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust. Identities = 231/309 (74%), Positives = 267/309 (86%) Query: 27 FGVIPLAGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNLHL 86 +G++PL GS YL +A+L PFLAL LA VGLN+LTGYAGQVSLGSAAF+A GA+AAYN +L Sbjct: 28 YGIVPLIGSSYLFEAILLPFLALGLAGVGLNILTGYAGQVSLGSAAFMAAGAFAAYNFNL 87 Query: 87 RLPELPLLLDLVLAGLVAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSN 146 R+ LPL+ +VLAG+VAAAIGIVFGLPSLRL+GFYLAVSTLAAQFFVQWALTKF WFSN Sbjct: 88 RVEGLPLIGSIVLAGIVAAAIGIVFGLPSLRLKGFYLAVSTLAAQFFVQWALTKFSWFSN 147 Query: 147 DNPSGVIDAPALTIAGYSFTSAAGRYLFSLAVVTVATILTLLLLQSQTGRNFIAVRDHEI 206 ++ SGVIDAP L+I G + A GRYLF+L V + T L L+ SQTGRNFIA+RD+E Sbjct: 148 NSASGVIDAPRLSIGGLALDGAVGRYLFALTTVALLTFLAHRLVTSQTGRNFIAIRDNET 207 Query: 207 AAKVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGG 266 AA++IG+P+L+TKLLAF +SSF+IGVAGV+WAFAYLRTVEPAGF+LDRSFQILFIIIIGG Sbjct: 208 AARIIGIPVLKTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFDLDRSFQILFIIIIGG 267 Query: 267 LASLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEMSQRIVIGALIIAFLIAEPRG 326 LAS+RGAF GAA IVVFPL LSRLG LLG VFDSGVL+MSQRIV+GALII FLI EP G Sbjct: 268 LASIRGAFFGAALIVVFPLGLSRLGGFLLGDVFDSGVLDMSQRIVLGALIILFLILEPDG 327 Query: 327 LIALWDRFR 335 L+ALWDR R Sbjct: 328 LVALWDRVR 336 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 161/296 (54%), Gaps = 15/296 (5%) Query: 51 LAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYN--LHLRLPELPLLLDLVLAGLVAAAIG 108 +AA+GLN+ G AGQ+SL AA + +GAY N LHL + + +L +AGL AA +G Sbjct: 60 IAAIGLNITLGLAGQISLAHAALMGIGAYTVANAALHLGVNSVAIL---PIAGLAAALLG 116 Query: 109 IVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSNDNPSGVIDAP--ALTIAGYSFT 166 I+ LPS RL+ +YLA+++LAAQ +++ +S +P P T+ G S T Sbjct: 117 IILSLPSFRLKEYYLAMASLAAQLILEYV------YSRIDPDQYTPVPPETKTLLGISLT 170 Query: 167 SAAGRYLFSLAVVTVATILTLLLLQSQTGRNFIAVRDHEIAAKVIGVPLLRTKLLAFGVS 226 Y F LA+ V + + +S GR AVRD+++A++ IG+ + K AF + Sbjct: 171 EPTALYYFILAITVVMALAAANIGRSSLGRAMKAVRDNDVASEAIGINVQLVKATAFAIG 230 Query: 227 SFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGGLAS-LRGAFLGAAFIVVFPL 285 F GVAG L+A Y + GF L S ++L +++IGG + G+ LG + Sbjct: 231 GFYAGVAGGLYAI-YSSGIGWEGFTLVNSIELLGMVLIGGPGRVVWGSLLGVLVMRTGWT 289 Query: 286 ILSRLGAALLGGVFDSGVLEMSQRIVIGALIIAFLIAEPRGLIALWDRFRAASAAW 341 ++ LL G+ S + ++ IV+G LI+AF+IAEP GLIA+ R + W Sbjct: 290 MMESTITPLLAGIGLSIIASSAKYIVLGFLIVAFIIAEPEGLIAVLRRVKEYFRLW 345 >SP0751 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Spn Streptococcus pneumoniae TIGR4 Length = 318 Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 152/282 (53%), Gaps = 30/282 (10%) Query: 53 AVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNLHLRLPELPLLLDLVLAG-LVAAAIGIVF 111 AVGLN++ G++GQ SLG A F+A+GAYAA + + P +L G L++ A+ ++ Sbjct: 49 AVGLNLIVGFSGQFSLGHAGFMAIGAYAAAIIGSKSPTYGAFFGAMLVGALLSGAVALLV 108 Query: 112 GLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSNDNPSGVIDAPALTIAGYSFTSAAGR 171 G+P+LRL+G YLAV+TL ++ + G +N +G++ P +FT+ Sbjct: 109 GIPTLRLKGDYLAVATLGVSEIIRIFIINGGSLTNG-AAGILGIP-------NFTTWQMV 160 Query: 172 YLFSLAVVTVATILTLLLLQSQTGRNFIAVRDHEIAAKVIGVPLLRTKLLAFGVSSFLIG 231 Y F V + TI TL L+S GR+ ++VR+ EIAA+ +GV + K++AF + Sbjct: 161 YFF----VVITTIATLNFLRSPIGRSTLSVREDEIAAESVGVNTTKIKIIAFVFGAITAS 216 Query: 232 VAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGGLASLRGAFLGAAFIVVFPLILSRLG 291 +AG L A ++ +V P + S +L I++ GGL S+ GA + A + + ++L + Sbjct: 217 IAGSLQA-GFIGSVVPKDYTFINSINVLIIVVFGGLGSITGAIVSAIVLGILNMLLQDVA 275 Query: 292 AALLGGVFDSGVLEMSQRIVIGAL-IIAFLIAEPRGLIALWD 332 S R++I AL ++ +I P GL+ W+ Sbjct: 276 ---------------SVRMIIYALALVLVMIFRPGGLLGTWE 302 >RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 378 Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 35/307 (11%) Query: 53 AVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNL------------HLRLPE-LPLLLDLVL 99 A+GLN++ G+AG + LG AF AVGAY L H P L LL+ V+ Sbjct: 54 ALGLNIVVGFAGLLDLGYIAFYAVGAYMMALLGSPHLTNQFEWIHQLFPNGLHLLIWWVI 113 Query: 100 ---AGLVAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSN--DNPSGVID 154 AGL AA GI+ G P+L+LRG YLA+ TL ++ + N + P GV Sbjct: 114 PLGAGL-AALFGILLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLDRPVNITNGPKGVNL 172 Query: 155 APALTIAGYSFTSAAG------------RYLFSLAVVTVATILTLLLLQSQTGRNFIAVR 202 + + G+ F+ YLF L + + T+ L L S+ GR ++A+R Sbjct: 173 IEPVKLFGFDFSKRHDIFGIHFEPVHMYYYLFVLLAMGIITV-CLRLQNSRIGRAWVAIR 231 Query: 203 DHEIAAKVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFII 262 + EIAAK +G+ KLLAF + + GV+G ++A ++ V P F L S IL I+ Sbjct: 232 EDEIAAKAMGINTRNIKLLAFAMGASFGGVSGAMFA-SFQGFVSPESFVLWESIYILAIV 290 Query: 263 IIGGLASLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEMS--QRIVIGALIIAFL 320 ++GG+ + G LG +V F +L L + +F ++E ++++ G ++ + Sbjct: 291 VLGGMGHIPGVILGGILLVGFQELLRALAEPIQNKLFGHVIVEAEVLRQLLFGLAMVGVM 350 Query: 321 IAEPRGL 327 + P GL Sbjct: 351 LYRPAGL 357