BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0222.0007.p         (236 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpT158 [O] COG0464 ATPases of the AAA+ class Atu Agrobacterium ...   107   2e-23
AF0477 [O] COG0464 ATPases of the AAA+ class Afu Archaeoglobus f...   105   8e-23
MA4064 [O] COG0464 ATPases of the AAA+ class Mac Methanosarcina ...   104   2e-22
AF1285 [R] COG1223 Predicted ATPase (AAA+ superfamily) Afu Archa...   100   3e-21
SPAC17A5.01 [O] COG0464 ATPases of the AAA+ class Spo Schizosacc...    99   1e-20

>AGpT158 [O] COG0464 ATPases of the AAA+ class Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 345

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 78/119 (65%)

Query: 1   VLLSGPPGNGKTSVAEAIAEALAVQFFTVRYDALVGSYLGETNSRLARLFDYARTVPCVL 60
           +LL GPPG+GKT  A A+A  L    FTV+ D L+  ++GET S+L  +F        V 
Sbjct: 143 LLLIGPPGSGKTMTAAALAGELHTPLFTVQLDGLMTKFMGETASKLRLVFSAMAETKGVY 202

Query: 61  FFDEFDSIGKERGDVHETGEIKRVVSFLLMQIDQLPSYVVTVAATNHAELLDRAVWRRF 119
           FFDEFD+IG +R + ++ GEI+RV++  L  +++  S  + VAATNH ELLD A++RRF
Sbjct: 203 FFDEFDAIGAKRAERNDVGEIRRVLNSFLQFLEEDESDGLVVAATNHPELLDPALFRRF 261


>AF0477 [O] COG0464 ATPases of the AAA+ class Afu Archaeoglobus fulgidus
          Length = 409

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 5/123 (4%)

Query: 1   VLLSGPPGNGKTSVAEAIAEALAVQFFTVRYDALVGSYLGETNSRLARLFDYARTV-PCV 59
           +L  GPPG GKT+ A A+++ L +    V+   +   YLGET+  + ++FD AR + PC+
Sbjct: 201 LLFIGPPGTGKTTTARALSKKLYLPLLEVKLSMITSQYLGETSKNIEKIFDIARMMSPCI 260

Query: 60  LFFDEFDSIGKERGDVHETGEIKRVVSFLLMQIDQL---PSYVVTVAATNHAELLDRAVW 116
           LF DEFD + K R    E   IKR V+ LL  ID +      V+ +AATNH  LLD AVW
Sbjct: 261 LFIDEFDYVAKMRTS-DEHAAIKRAVNTLLKSIDDINLVEDGVLLIAATNHPSLLDPAVW 319

Query: 117 RRF 119
           RRF
Sbjct: 320 RRF 322


>MA4064 [O] COG0464 ATPases of the AAA+ class Mac Methanosarcina
           acetivorans str.C2A
          Length = 428

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 5/123 (4%)

Query: 1   VLLSGPPGNGKTSVAEAIAEALAVQFFTVRYDALVGSYLGETNSRLARLFDYARTV-PCV 59
           +L  GPPG GKTSVA A++E L++ F  V+   +   YLGET   + R+F  A+ + PC+
Sbjct: 213 LLFVGPPGTGKTSVARALSEQLSIPFVEVKLSMITDQYLGETAKNIDRVFLLAKKLNPCI 272

Query: 60  LFFDEFDSIGKERGDVHETGEIKRVVSFLLMQIDQLPSY---VVTVAATNHAELLDRAVW 116
           LF DE D + K R    E   IKR V+ LL  ID++      V+ +AATNH  +LD A W
Sbjct: 273 LFIDELDFVAKARTS-DENAAIKRAVNTLLKAIDEISLVEHGVLLIAATNHPRMLDSAAW 331

Query: 117 RRF 119
           RRF
Sbjct: 332 RRF 334


>AF1285 [R] COG1223 Predicted ATPase (AAA+ superfamily) Afu Archaeoglobus
           fulgidus
          Length = 352

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 7/150 (4%)

Query: 1   VLLSGPPGNGKTSVAEAIAEALAVQFFTVRYDALVGSYLGETNSRLARLFDYARTV-PCV 59
           VL  GPPG GKT +A+A++      F +V+   L+G ++G+   R+  L++ AR + PC+
Sbjct: 138 VLFYGPPGTGKTMMAKALSNEAKTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPCI 197

Query: 60  LFFDEFDSIGKERGDVHETGEIKRVVSFLLMQIDQLPSY--VVTVAATNHAELLDRAVWR 117
           +F DEFD+I  +RG     G++  +V+ LL ++D   S   + T+AATN  ELLD ++  
Sbjct: 198 VFLDEFDAIALDRGYQEIRGDVSEIVNALLTELDGTNSNEGICTIAATNRVELLDASIRS 257

Query: 118 RF----QLRQPSLDALSVFLDRQFEAWPEP 143
           RF    + R PS +     L R  E +P P
Sbjct: 258 RFEEEIEFRLPSYEERLEILRRNLEEFPVP 287


>SPAC17A5.01 [O] COG0464 ATPases of the AAA+ class Spo Schizosaccharomyces pombe
          Length = 948

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/123 (41%), Positives = 80/123 (65%), Gaps = 6/123 (4%)

Query: 1   VLLSGPPGNGKTSVAEAIAEALAVQFFTVRYDALVGSYLGETNSRLARLFDYAR-TVPCV 59
           VLL GPPG GKT +A+A+A  L+++F +++   L+  Y+GE+ + +  +F+ AR + PCV
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCV 750

Query: 60  LFFDEFDSIGKERGDVHETGEI-KRVVSFLLMQIDQLP----SYVVTVAATNHAELLDRA 114
           +FFDE DSI   RG+  ++G +  RVVS LL ++D +      YV  + ATN  +LLD +
Sbjct: 751 IFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPS 810

Query: 115 VWR 117
           + R
Sbjct: 811 LLR 813