BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0005.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll8495 [L] COG0582 Integrase Mlo Mesorhizobium loti                   94   8e-20

>mll8495 [L] COG0582 Integrase Mlo Mesorhizobium loti
          Length = 359

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 60/78 (76%), Gaps = 1/78 (1%)

Query: 7   GQPLAGKIRSAWNGILEDAGLGDDVVRHSLRHTAATWLMQAGVDMWEAAGWLGMTVEQLE 66
           G+P+ G +R +++    +A LG++V  H LRHT ATWLMQ  V +W+AAG LGMTV+Q+E
Sbjct: 283 GEPI-GLMRKSFDAARVEAKLGEEVTPHILRHTRATWLMQRRVPIWDAAGSLGMTVKQME 341

Query: 67  ANYGHHHPDFQEEAAEAF 84
           + YGHHHPDFQ+ AA+A+
Sbjct: 342 STYGHHHPDFQQAAADAY 359