BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0014.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0598 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro...   100   7e-22
CC3472 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro...    96   3e-20
PA3348 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro...    83   1e-16
VC2201 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro...    82   3e-16
RSp1405 [NT] COG1352 Methylase of chemotaxis methyl-accepting pr...    75   4e-14

>CC0598 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Ccr
           Caulobacter vibrioides
          Length = 276

 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 65/97 (67%)

Query: 1   VQRGLPIQMLVKYFKQSGEFWQVNPELRAMVQHRQLNLLHDFSQLGTFDVIFCRNVLIYF 60
           +QRGLPIQ L +YF + GE W+   ELR+ V  ++ NL+     LG FD++FCRNVLIYF
Sbjct: 157 IQRGLPIQKLTRYFDKDGESWRAKNELRSRVTWKRHNLMDSPWALGRFDIVFCRNVLIYF 216

Query: 61  DQDTKINIFNRLARLMEADGFLVLGAAETVVGLTDTF 97
           D  T+  I + +A  M+  G L LGA+ET +G+T+ F
Sbjct: 217 DISTRRRILDLVAGQMQNGGHLFLGASETTLGVTNAF 253


>CC3472 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Ccr
           Caulobacter vibrioides
          Length = 276

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 1   VQRGLPIQMLVKYFKQSGEFWQVNPELRAMVQHRQLNLLHDFSQLGTFDVIFCRNVLIYF 60
           VQRGLPI+ML+KYF+   + W ++P +R MV+ +++NLL D S +G FDVI  RNVL   
Sbjct: 159 VQRGLPIRMLIKYFENQDDTWAISPRIRQMVRWKRINLLADLSAMGRFDVILLRNVLGGM 218

Query: 61  DQDTKINIFNRLARLMEADGFLVLGAAETVVGLTDTFKPLPERRGLY-RPSGVRGGLA 117
           D   +  +   LA L+  DG LVL   +    + +   P P  RG+Y R   +R   A
Sbjct: 219 DASLRGQVARSLAALLPDDGVLVLDTEDDASEIDELLTPAPGGRGIYLRDPSIRAAAA 276


>PA3348 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Pae
           Pseudomonas aeruginosa
          Length = 274

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 3   RGLPIQMLVKYFKQSGE-FWQVNPELRAMVQHRQLNLLHDFSQLGTFDVIFCRNVLIYFD 61
           RGL  + L +YF   G   W V P +R+ V+ R LNLL  ++ LG FD++FCRNVLIYF 
Sbjct: 165 RGLSPERLQRYFDAKGPGRWAVKPAIRSRVEFRALNLLDSYASLGKFDMVFCRNVLIYFS 224

Query: 62  QDTKINIFNRLARLMEADGFLVLGAAETVVGLTDTFK 98
            + K +I  R+   ++  G+L LGA+E +  L D ++
Sbjct: 225 AEVKRDILLRIHGTLKPGGYLFLGASEALNNLPDHYQ 261


>VC2201 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Vch
           Vibrio cholerae
          Length = 275

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 3   RGLPIQMLVKYFKQSGE-FWQVNPELRAMVQHRQLNLLHDFSQLGTFDVIFCRNVLIYFD 61
           RGL  +    +F+ +G+   +V   ++ +V  R  NL+  +S LG FD+IFCRNVLIYF 
Sbjct: 166 RGLSPERRRVFFEDAGDGRMKVKDNVKRLVNFRPQNLMESYSLLGKFDIIFCRNVLIYFS 225

Query: 62  QDTKINIFNRLARLMEADGFLVLGAAETVVGLTDTFK 98
            D K  + N++A  +   G+L+LGA+E++ GLTD F+
Sbjct: 226 PDMKSKVLNQMAASLNPGGYLLLGASESLTGLTDKFE 262


>RSp1405 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Rso
           Ralstonia solanacearum
          Length = 292

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 4   GLPIQMLVKYF-----KQSGEFWQVNPELRAMVQHRQLNLL-HDFSQLGTFDVIFCRNVL 57
            L    L KYF     KQ G + +V PEL+AM+  RQ+NLL  D+     FDVIFCRNV+
Sbjct: 173 ALSADRLKKYFLRGTGKQEG-YARVRPELQAMIDFRQINLLDRDWPLTQKFDVIFCRNVM 231

Query: 58  IYFDQDTKINIFNRLARLMEADGFLVLGAAETVVGLTDTFK 98
           IYFD+ T+  I      +M+ DG L  G +E+ + +T  + 
Sbjct: 232 IYFDKPTQAKILEHFVDVMKPDGLLFAGHSESFLQVTKAWS 272