BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0214.0033.p (209 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinor... 208 9e-54 BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil... 182 5e-46 PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo... 101 1e-21 BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil... 90 3e-18 PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo... 87 4e-17 >SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinorhizobium meliloti Length = 260 Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 100/181 (55%), Positives = 128/181 (70%), Gaps = 1/181 (0%) Query: 28 MSQRAVIVIDIQNEYFPDGKLPLVGIVHAAANAARVIQTARARGDAVIHVQHEMQESHPS 87 MS+RA+IV+D+QN+Y GK PLVGI A NAAR++ AR GD V++++HE P Sbjct: 80 MSKRAIIVVDLQNDYLTTGKFPLVGIDKALENAARLVDAARRSGDLVVNIRHESPAGAP- 138 Query: 88 IFAPNTRGVEINPIVQPLEREALVVKHYPNAFRDTDLKQRLDAGGVKEVVIVGAMSHMCI 147 F T G EI P + P EA+V K YPN+FR+T+L L + GV EV ++GAMSHMCI Sbjct: 139 FFVSGTEGAEIIPNIAPQHGEAVVTKRYPNSFRETELASLLSSAGVDEVTVIGAMSHMCI 198 Query: 148 DATSRAAADYGYKTTILHDACATCDLPFGGIIVPAVQVHAAFMAALGLAYGTVTTTSDYL 207 DAT+RAA+D GYKTT++ DACAT DL F G +VPA +VHAA+M+AL YG V +T DYL Sbjct: 199 DATARAASDLGYKTTVVEDACATRDLEFRGEVVPAAKVHAAYMSALAFGYGQVVSTRDYL 258 Query: 208 A 208 A Sbjct: 259 A 259 >BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus subtilis Length = 180 Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 91/176 (51%), Positives = 117/176 (66%) Query: 32 AVIVIDIQNEYFPDGKLPLVGIVHAAANAARVIQTARARGDAVIHVQHEMQESHPSIFAP 91 A++VIDIQN+YFP+GK+ L AA NAA+++ R G V HVQH + + F P Sbjct: 4 ALLVIDIQNDYFPNGKMALTNPEKAAQNAAKLLSHFRNTGAPVFHVQHITEGNIAHFFHP 63 Query: 92 NTRGVEINPIVQPLEREALVVKHYPNAFRDTDLKQRLDAGGVKEVVIVGAMSHMCIDATS 151 NT GVEI+ V+PLE+E ++VKH PN+F +TDL +L GVKE+V+ G MSHMCIDAT Sbjct: 64 NTEGVEIHESVRPLEKETVIVKHMPNSFFNTDLNGKLQEEGVKELVVCGMMSHMCIDATV 123 Query: 152 RAAADYGYKTTILHDACATCDLPFGGIIVPAVQVHAAFMAALGLAYGTVTTTSDYL 207 R+A ++GY ++ DACAT L IVPA VH AFMAAL Y TV TT +L Sbjct: 124 RSAVEHGYVCQVVEDACATTTLQIEDKIVPAEHVHYAFMAALNGVYATVKTTEAFL 179 >PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas aeruginosa Length = 198 Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 4/181 (2%) Query: 28 MSQRAVIVIDIQNEYFPDGKLPLVGIVHAAANAARVIQTARARGDAVIHVQHEMQESHPS 87 + Q +++ID Q EY G L L G+ AAA ++Q ARA G ++HV+H + Sbjct: 20 LRQSTLLIIDAQEEYR-SGALRLPGLDAAAAEIGVLVQAARASGTPIVHVRHLGIQG--G 76 Query: 88 IFAPNTRGVEINPIVQPLEREALVVKHYPNAFRDTDLKQRLDAGGVKEVVIVGAMSHMCI 147 +F P + P +QP E +V K PNAF T+L L G ++++ G M+H + Sbjct: 77 LFDPQGPRGQFLPELQPEAGEKVVEKRLPNAFSGTELHDLLQNHGRLDLIVCGFMTHSSV 136 Query: 148 DATSRAAADYGYKTTILHDACATCDLP-FGGIIVPAVQVHAAFMAALGLAYGTVTTTSDY 206 T RAA DYGY+ T+ ACAT D+P G ++ A + A +AALG + + + Sbjct: 137 STTVRAAKDYGYRCTLADSACATRDIPTLNGGVLSAADLQRAEIAALGDNFAAIVAQARE 196 Query: 207 L 207 L Sbjct: 197 L 197 >BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus subtilis Length = 187 Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 27 LMSQRAVIVIDIQNEYFPDGKLPLVGIVHAAANAARVIQTARARGDAVIHVQHEMQESHP 86 + ++A+I++D+Q + F D K V A N +++++ R +G VI++QH + H Sbjct: 1 MEEKKALIIVDVQ-KAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPH- 58 Query: 87 SIFAPNTRGVEINPIVQPLEREALVVKHYPNAFRDTDLKQRLDAGGVKEVVIVGAMSHMC 146 S+F P G I IV+P++ E ++ K ++F T+L++ L + VVI G + C Sbjct: 59 SLFHPKNEGFAIKEIVKPMDEEVIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHC 118 Query: 147 IDATSRAAADYGYKTTILHDACATCDLPFG-----GIIVPAVQVHAAFMAALGLAYGTVT 201 + T+R + + G+ T ++ DA A FG A +H +A L + T+ Sbjct: 119 VSTTTRMSGNLGFDTYLISDATA----AFGMRDQNDTYYDAATIHNISLATLHDEFATIL 174 Query: 202 TT 203 TT Sbjct: 175 TT 176 >PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas aeruginosa Length = 193 Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 3/186 (1%) Query: 23 SKENLMSQRAVIVIDIQNEYFPDGKLPLVGIVHAAANAARVIQTARARGDAVIHVQHEMQ 82 ++ + SQ A++++D+Q LP A A ++ RA G V+HV+H + Sbjct: 5 AQRSARSQVALLIVDLQ-RGMQRHDLPPRNNPGAEARIVELLAAWRAAGWPVVHVRHVSR 63 Query: 83 ESHPSIFAPNTRGVEINPIVQPLEREALVVKHYPNAFRDTDLKQRLDAGGVKEVVIVGAM 142 + S FAP GVE P + P + EA+ K+ P+AF ++ L++ L +++V +VG Sbjct: 64 QPG-SPFAPGQPGVEFQPALAPRDDEAVFEKNVPDAFINSGLQRWLHVRDIRQVALVGVA 122 Query: 143 SHMCIDATSRAAADYGYKTTILHDACATCDLP-FGGIIVPAVQVHAAFMAALGLAYGTVT 201 + ++A++R+A + G++T ++ DAC T P F G A +VHA +A L Y V Sbjct: 123 TENSVEASARSAGNLGFQTWVVADACFTFAKPDFHGTPRSADEVHAMALANLHGEYAVVL 182 Query: 202 TTSDYL 207 ++ L Sbjct: 183 RAAELL 188