BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0214.0007.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA586 [G] COG1175 ABC-type sugar transport systems, permease c... 132 8e-31 AGc4553 [G] COG1175 ABC-type sugar transport systems, permease c... 121 1e-27 TM0431 [G] COG1175 ABC-type sugar transport systems, permease co... 92 1e-18 TM0278 [G] COG1175 ABC-type sugar transport systems, permease co... 91 3e-18 AGl839 [G] COG1175 ABC-type sugar transport systems, permease co... 89 7e-18 >AGpA586 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 315 Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 92/155 (59%), Gaps = 8/155 (5%) Query: 20 LSAPAVIFTVAMIAFPVVYTIWLGFQNFSSTGKQSFAGLANYSKLISDYEFWHGLWVTIA 79 + APAV F MI FP++Y IWL + S F GLANY +L+SD EF + +T Sbjct: 40 MMAPAVAFVGLMIVFPILYAIWLSLRENSLGMDDRFVGLANYVELLSDGEFHNAFILTWV 99 Query: 80 LYVLSLVLQLVFGVWLALVLFHAKRLPGIVRSLFISPFMMPPVVA--------XPSLGAA 131 LY L+L +Q+V G WL L + +VR+ I PFMMPPVV P++G A Sbjct: 100 LYGLALAMQMVIGTWLGFTLNRVRSARNLVRTAAIMPFMMPPVVVGMMAIVILDPAVGVA 159 Query: 132 NYILQSFGLPPSDWLASPTWVIPTVALIDSWQWTP 166 N++L G+ PS WLA P WV+ TVA +D+WQW+P Sbjct: 160 NWLLGQVGIGPSLWLADPKWVLLTVAAVDTWQWSP 194 >AGc4553 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 312 Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 8/166 (4%) Query: 23 PAVIFTVAMIAFPVVYTIWLGFQNFSSTGKQSFAGLANYSKLISDYEFWHGLWVTIALYV 82 PA++ A+I FP V+T+W+ ++ +QSF G NY +L SD FW LW T+ V Sbjct: 34 PALVVISAVIVFPWVFTLWMSVHRWTLGQEQSFIGFDNYIRLASDLRFWESLWHTLIYTV 93 Query: 83 LSLVLQLVFGVWLALVLFHAKRLPGIVRSLFISPFMMPPV--------VAXPSLGAANYI 134 LS+V L G ALV L G +R +F+ P M PV + P LG NY+ Sbjct: 94 LSVVAPLFLGTLAALVFDAQFPLRGFLRGVFVMPMMATPVAIALVWTMMFHPQLGVLNYL 153 Query: 135 LQSFGLPPSDWLASPTWVIPTVALIDSWQWTPYVALIVLGGLQSLP 180 L G+ P +W+ + + VIP++ L+++WQWTP V LIVLGGL ++P Sbjct: 154 LSLIGIGPLEWIYNQSTVIPSLVLVETWQWTPLVMLIVLGGLAAVP 199 >TM0431 [G] COG1175 ABC-type sugar transport systems, permease components Tma Thermotoga maritima Length = 286 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%) Query: 23 PAVIFTVAMIAFPVVYTIWLGFQNFSSTGKQSFAGLANYSKLISDYEFWHGLWVTIALYV 82 P ++F V +A PV+ +GF ++ F GL N+ L+ D FW+ +WV+I L + Sbjct: 15 PGLVFLVLFVAVPVISVFIMGFFKWNLLSPPRFVGLENFKMLLKDKWFWNSVWVSIKLLL 74 Query: 83 LSLVLQLVFGVWLALVLFHAKRLPGIVRSLFISPFMMPPVVAXP--------SLGAANYI 134 L++ +Q + LAL L+ I+R+ F P+MMP V +G N+I Sbjct: 75 LAVPMQFFVSLGLALCLYEETTASKILRAFFYWPYMMPAVAGTTMWKWLLSYDIGLLNHI 134 Query: 135 LQSFGLPPSDWLASPTWVIPTVALIDSWQWTPYVALIVLGGLQSLP 180 L++ GLPP WL P + ++AL+ +W T + ++ + GLQ++P Sbjct: 135 LRTLGLPPVPWLIKPFPALFSIALLRTWGMTGLLMVMFITGLQNVP 180 >TM0278 [G] COG1175 ABC-type sugar transport systems, permease components Tma Thermotoga maritima Length = 294 Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 20/243 (8%) Query: 12 RQRLEMSALSAPAVIFTVAMIAFPVVYTIWLGFQNF--SSTGKQSFAGLANYSKLISDYE 69 R+R+ + P + +AM +P + IW F+++ S + + F GL+NY ++ D Sbjct: 2 RKRIVPWLMVLPVLALFLAMTIYPFGFMIWASFRDYDLSKSAETHFIGLSNYFQIFRDST 61 Query: 70 FWHGLWVTIALYVLSLVLQLVFGVWLALVLFHAKRLPGIVRSLFISPFMMPPVVAXPS-- 127 + T L +++ ++LV GV +A L + I+RS + P M+PP V+ + Sbjct: 62 AIESMKFTAKLLSIAVPVELVLGVLIAF-LIRGVKGEKIIRSSLLIPMMIPPAVSGVAWK 120 Query: 128 ------LGAANYILQSFGLPPSDWLASPTWVIPTVALIDSWQWTPYVALIVLGGLQSLPP 181 G N+ L FG+P WL P + + +ID WQWTP++ L++ GLQS+P Sbjct: 121 MLYNFAFGPVNWFLSLFGVPKISWLGDPFYAQLGIIIIDVWQWTPFIFLMIYAGLQSIPQ 180 Query: 182 S--GTSRPSSASLCRCCCRPSSP--RPSCAAS-----ISCVSSTSSTSRPRAGRATPRTH 232 +R A R P RP + I C+ + G TH Sbjct: 181 DLIDAARVDGADWGRVFLHVEFPLLRPLILVALVLRIIDCLKTFDIVFMTTWGGPGSATH 240 Query: 233 STS 235 + S Sbjct: 241 TYS 243 >AGl839 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 15/208 (7%) Query: 22 APAVIFTVAMIAFPVVYTIWLGFQNFS--STGKQSFAGLANYSKLISDYEFWHGLWVTIA 79 AP+V+ + + P+ T+W FQN++ + SFAGL NY +D F+ +W T+ Sbjct: 31 APSVLLLLVWMIVPLAMTLWFSFQNYNLLNPANVSFAGLFNYQYFYTDPAFFQSIWNTLL 90 Query: 80 LYVLSLVLQLVFGVWLALVLFHAKRLPGIVRSLFISP-FMMPPVVAX--------PSLGA 130 + LV+ +V G+ +AL+L + GIVR + ISP F+MPPV A P G Sbjct: 91 IVGGVLVITVVGGIAIALLLDNDIFGQGIVRIMIISPFFVMPPVAALVWKNMIMHPGYGV 150 Query: 131 ANYILQSFGLPPSDWLASPTWVIPTVALIDSWQWTPYVALIVLGGLQSL--PPSGTSRPS 188 + + FGL P DW A + + ++ +I +WQW P+ LI+L LQSL + Sbjct: 151 LADLSRFFGLQPVDWFAQ--FPLLSIIIIVAWQWLPFATLILLTALQSLDGEQKEAAEMD 208 Query: 189 SASLCRCCCRPSSPRPSCAASISCVSST 216 A+ + P + A ++ + T Sbjct: 209 GANFINRFIYLTLPHLARAITVVILIQT 236