BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0209.0003.p (409 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 443 e-124 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 437 e-122 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 429 e-120 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 415 e-116 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 117 7e-26 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/404 (55%), Positives = 291/404 (72%), Gaps = 6/404 (1%) Query: 7 ALLLGTAMVLSAASVASAQEKLDKTVKIGALSDQSGLYADLAGPGSTLAAQMAIEDSGLK 66 +++L TAM L+A + A A E D VKIG L+DQSG+YA+ G S AA+MA+ED G K Sbjct: 4 SIVLSTAMALAAGTAAYAAEISDGKVKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGK 63 Query: 67 AKGWTIDLISGDHQNKPDIGTTIARQWFDVDKVDTIVDVPNSGVALAVNNVVKEKNGVYI 126 G +++++ DHQNK D+ + IARQW+D ++VD+I+++ +S V LAV + K+K + + Sbjct: 64 VLGAPVEVVTADHQNKADVASNIARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITV 123 Query: 127 NSGAATSDLTNAQCSPNTVHWTYDTYMLAHATGQALVKAGGDTWFFLTADYAFGAALERD 186 N+GAAT++LT QCSP HW YDTY LA TG ALVK GGD+WFFLTADYAFG +LE + Sbjct: 124 NTGAATTELTGKQCSPYGFHWAYDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEEN 183 Query: 187 TTSVVTANGGKVVGGVKHPLNTADFSSFLLQAQASKAKIIGLANAGGDTTNSIKQAAEFG 246 T++ V ANGGKV+G V+HPL T D+SSFLLQAQ+S AK+IGLANAG DT+N+IKQA+EFG Sbjct: 184 TSNFVKANGGKVLGSVRHPLATTDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFG 243 Query: 247 IVKGGQKLAALLLFLTDVKAIGLETAQGLNFTETFYWDLNDKTRAFSKRFSERMKNSAPP 306 IV GGQ+LAALL L +V +GLE AQGL TE FYWD +D++R F +RF ER A P Sbjct: 244 IVAGGQRLAALLFTLAEVHGLGLEAAQGLTLTEGFYWDRDDESRKFGERFKER--TGAMP 301 Query: 307 TMVQAGVYAGLIHYFKALEALGGNPHDGAKVVAK-MKTIPTDDPLFGKGEVEANGRVTHD 365 M+ G Y+ ++HY KA+E G D A VAK MK +P +D G V ANGR+ HD Sbjct: 302 NMIHTGTYSAVLHYLKAIEKAG---TDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHD 358 Query: 366 AYLFEVKKPSESKGPWDFYKLVGTVPGNQAFTPLDKSTCPLLKK 409 YL EVKKP ESK PWD+YK++ T+PG +AF KS CPL+K+ Sbjct: 359 MYLMEVKKPDESKQPWDYYKVLATIPGKEAFMDPTKSGCPLVKQ 402 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/388 (54%), Positives = 278/388 (71%), Gaps = 4/388 (1%) Query: 22 ASAQEKLDKTVKIGALSDQSGLYADLAGPGSTLAAQMAIEDSGLKAKGWTIDLISGDHQN 81 +SA E D VKIG L+DQSG+YAD G S AA+MA ED G G I++I+ DHQN Sbjct: 18 SSAAEISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQN 77 Query: 82 KPDIGTTIARQWFDVDKVDTIVDVPNSGVALAVNNVVKEKNGVYINSGAATSDLTNAQCS 141 KPD+ + IARQW+D ++VD+I+++ S V LAV + KEK + IN+GAATS+LT QC+ Sbjct: 78 KPDVASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCT 137 Query: 142 PNTVHWTYDTYMLAHATGQALVKAGGDTWFFLTADYAFGAALERDTTSVVTANGGKVVGG 201 P HW YDT+ LA TG +LV+ GGDTW+FLTADYAFG +LE TT V + GGKV+G Sbjct: 138 PYGFHWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGS 197 Query: 202 VKHPLNTADFSSFLLQAQASKAKIIGLANAGGDTTNSIKQAAEFGIVKGGQKLAALLLFL 261 V+HPL+T D+SSFLLQAQAS AK++GLANAG DT+N+IKQAAEFGIV GGQ+LAALL L Sbjct: 198 VRHPLSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTL 257 Query: 262 TDVKAIGLETAQGLNFTETFYWDLNDKTRAFSKRFSERMKNSAPPTMVQAGVYAGLIHYF 321 +V +GLE AQGL TE FYWD +D++RAF KRF +R P M+QAG Y+ ++ Y Sbjct: 258 AEVHGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRM--PNMIQAGTYSAVLQYL 315 Query: 322 KALEALGGNPHDGAKVVAKMKTIPTDDPLFGKGEVEANGRVTHDAYLFEVKKPSESKGPW 381 KA++ G + + V K+ +P +D G+V NGR+ +D YL EVKKP ESK PW Sbjct: 316 KAIKEAGTDETEA--VAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPW 373 Query: 382 DFYKLVGTVPGNQAFTPLDKSTCPLLKK 409 D+YK++ T+PG+QA+ ++S CPL+K+ Sbjct: 374 DYYKVLATIPGDQAYMKPEESGCPLVKQ 401 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust. Identities = 219/408 (53%), Positives = 281/408 (68%), Gaps = 8/408 (1%) Query: 1 MKNKISALLLGTAMVLSAASVASAQEKLDKTVKIGALSDQSGLYADLAGPGSTLAAQMAI 60 M K+ A L AMVL A S A+ + D VKIG L+DQSG+YAD G S AA MA+ Sbjct: 1 MHKKLIATL---AMVL-AGSTAALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMAV 56 Query: 61 EDSGLKAKGWTIDLISGDHQNKPDIGTTIARQWFDVDKVDTIVDVPNSGVALAVNNVVKE 120 ED G K G +++++ DHQNKPDI + IARQW+D ++VD+I+++ S VALAV + KE Sbjct: 57 EDFGGKVLGVPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKE 116 Query: 121 KNGVYINSGAATSDLTNAQCSPNTVHWTYDTYMLAHATGQALVKAGGDTWFFLTADYAFG 180 K + I +GAAT++LT QCSP HW YDT+ LA TG ALVK GGD+WFFLTADYAFG Sbjct: 117 KKKIDIVTGAATTELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFG 176 Query: 181 AALERDTTSVVTANGGKVVGGVKHPLNTADFSSFLLQAQASKAKIIGLANAGGDTTNSIK 240 +LE +T + V NGG VVG V+HPL T DFSSFLLQAQ+S AK+IGLANAG DT+N+IK Sbjct: 177 YSLEENTGNYVKENGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIK 236 Query: 241 QAAEFGIVKGGQKLAALLLFLTDVKAIGLETAQGLNFTETFYWDLNDKTRAFSKRFSERM 300 QAAEFGIV+GGQ+LAALL L +V +GL+ AQGL TE FYW+ ++++ F KRF ER Sbjct: 237 QAAEFGIVQGGQRLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMER- 295 Query: 301 KNSAPPTMVQAGVYAGLIHYFKALEALGGNPHDGAKVVAKMKTIPTDDPLFGKGEVEANG 360 P MV AG Y+ ++ Y KA+E G + + V ++ +P DD G V NG Sbjct: 296 -TGKMPNMVHAGTYSAVLQYLKAIEKAGTDETEA--VAKELHALPVDDVFAKNGTVAPNG 352 Query: 361 RVTHDAYLFEVKKPSESKGPWDFYKLVGTVPGNQAFTPLDKSTCPLLK 408 R+ HD YL EVKKP ESK PWD++K++ T+PG +AF +S C L+K Sbjct: 353 RMIHDMYLLEVKKPDESKEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/406 (53%), Positives = 283/406 (69%), Gaps = 8/406 (1%) Query: 4 KISALLLGTAMVLSAASVASAQEKLDKTVKIGALSDQSGLYADLAGPGSTLAAQMAIEDS 63 K++ L+ + L AAS A AQ DK VKIG ++D SGLYAD+ G G A +MAIED Sbjct: 5 KLAGALMAAGLGL-AASGAHAQVSGDK-VKIGYITDLSGLYADIDGQGGVEAVKMAIEDE 62 Query: 64 GLKAKGWTIDLISGDHQNKPDIGTTIARQWFDVDKVDTIVDVPNSGVALAVNNVVKEKNG 123 G K G I+L++ DHQNK DI + AR+W D +D +V NS +LA++ V EK Sbjct: 63 GGKVLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKR 122 Query: 124 VYINSGAATSDLTNAQCSPNTVHWTYDTYMLAHATGQALVKAGGDTWFFLTADYAFGAAL 183 V+I GA T+ LTN +C+P T+H+ YDT LA TG A+VK GG +WFFLTADYAFG +L Sbjct: 123 VFIGIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSL 182 Query: 184 ERDTTSVVTANGGKVVGGVKHPLNTADFSSFLLQAQASKAKIIGLANAGGDTTNSIKQAA 243 E DT +VV ANGG VVG VKHPL+ +DFSS+LLQAQASKA+I+GLANAGGDT NSIK A Sbjct: 183 ENDTAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAK 242 Query: 244 EFGIVKGGQKLAALLLFLTDVKAIGLETAQGLNFTETFYWDLNDKTRAFSKRFSERMKNS 303 EFGI K K+A LL+F+ DV ++GL+TA+GL T+++YWD+ND TR F+ R+ +MK Sbjct: 243 EFGITK-TMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKM 301 Query: 304 APPTMVQAGVYAGLIHYFKALEALGGNPHDGAKVVAKMKTIPTDDPLFGKGEVEANGRVT 363 P+ +QA Y+ + +Y KA+ A G + D KV+A++K +D F KG + A+GR Sbjct: 302 --PSSLQAADYSAVSNYIKAVAAAGTDDPD--KVIAQLKKTQLND-FFSKGTIRADGRYV 356 Query: 364 HDAYLFEVKKPSESKGPWDFYKLVGTVPGNQAFTPLDKSTCPLLKK 409 HD YL +VK P+ESK PWD+ K+V T+PG+QAFT +S CPLLKK Sbjct: 357 HDMYLMQVKTPAESKKPWDYMKIVATIPGDQAFTTPAESKCPLLKK 402 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 117 bits (292), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 5/261 (1%) Query: 25 QEKLDKTVKIGALSDQSGLYADLAGPGSTLAAQMAIEDSGLKAK--GWTIDLISGDHQNK 82 Q + + ++IG + +G+YA +A A++A+ + G I+L+ D N Sbjct: 33 QARGEAPLRIGMVDPMTGVYAAVA-QNEVTGARLAVAQINARGGILGRPIELLVEDSAND 91 Query: 83 PDIGTTIARQWFDVDKVDTIVDVPNSGVALAVNNVVKEKNGVYINSGAATSDLTNAQCSP 142 G AR+ + D+V ++ NSG+A A+ V EK ++I SG T +T + C Sbjct: 92 VGTGVQKARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKW 151 Query: 143 NTVHWTYDTYMLAHATGQALVKAGGDTWFFLTADYAFGAALERDTTSVVTANGGKVVGGV 202 N T M A+A L G W F+T DYAFG L++ + + GG + G Sbjct: 152 NVYRVCNTTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNE 211 Query: 203 KHPLNTADFSSFLLQAQASKAKIIGLANAGGDTTNSIKQAAEFGIVKGGQKLAALLLFLT 262 PL T DFS++L++A+A+ ++ + G D N +KQ A+FGI K +A L L Sbjct: 212 LTPLGTTDFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGIGK-QMHIAGLQQELE 270 Query: 263 DVKAIGLETAQGLNFTETFYW 283 ++A+ E G+ E +YW Sbjct: 271 SLEAMPPEARVGIWMFE-WYW 290