BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0208.0008.p         (261 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll2193 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti        213   4e-55
PA0278 [R] COG0730 Predicted permeases Pae Pseudomonas aeruginosa     177   2e-44
AGc4214 [R] COG0730 Predicted permeases Atu Agrobacterium tumefa...   169   5e-42

>mll2193 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti
          Length = 249

 Score =  213 bits (541), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/235 (49%), Positives = 162/235 (68%), Gaps = 2/235 (0%)

Query: 24  FLLAGFVKGTLGLGLPTVAMGLLATTMAPGQAIAIVIVPAIVTNIWQTFVGPYLRDIIKR 83
           FL AGFVKG  G+GLPTVAMGLLA TM P +A A++++P++VTN+WQ F GP    + +R
Sbjct: 14  FLAAGFVKGVAGMGLPTVAMGLLAVTMPPAEAAALLLIPSLVTNLWQLFTGPAFAGLCRR 73

Query: 84  LWPLMLGTVAGIWINAGLLTGPYAAYGTVVLGVLLVIYAIVGLSRLSFKVARRDEKWIGG 143
           LW +M G + G    AG+LTG +A   +V LG  LV+YAI GL +LSF    R E  +  
Sbjct: 74  LWTMMAGIMLGAVAGAGVLTGAHAGAASVGLGAALVLYAIFGLFKLSFTTPARHEALMSP 133

Query: 144 IVGIITGLISAATGVQVIPSMPFMQAIGMEKDELVQALGVFFTTATVALAFNLTASGLLT 203
           +VG+ TGL++ ATGV VIP++P++Q++ +EK++L+QALG+ FT +T ALA  L  +G L 
Sbjct: 134 LVGVATGLVTGATGVFVIPAVPYLQSLRLEKEDLIQALGLSFTVSTAALAIGLFRTGALA 193

Query: 204 ATTA-LPGAV-AMAASFIGMFIGQAVRTRMQPEVFRRWFLISMILLGIYLAGSAL 256
           + TA L G++ A+  +  GMFIGQA+R  M  E FRR F   ++ LG+YLA  AL
Sbjct: 194 SPTAQLTGSILALLPALAGMFIGQALRQAMSVETFRRVFFAGLLALGVYLALEAL 248


>PA0278 [R] COG0730 Predicted permeases Pae Pseudomonas aeruginosa
          Length = 250

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 147/230 (63%), Gaps = 2/230 (0%)

Query: 15  HLLI-FIAFAFLLAGFVKGTLGLGLPTVAMGLLATTMAPGQAIAIVIVPAIVTNIWQTFV 73
           H LI  IA  FLLAGFVKG +GLGLPTV++GLL   M P QA A++IVP++VTN+WQ   
Sbjct: 6   HALIPLIALTFLLAGFVKGVVGLGLPTVSVGLLGLAMPPMQAAALLIVPSMVTNLWQLAC 65

Query: 74  GPYLRDIIKRLWPLMLGTVAGIWINAGLLTGPYAAYGTVVLGVLLVIYAIVGLSRLSFKV 133
           GP    ++KRL  L+LG V G  +    L G      T VLG+ LV YA++GL+ +   +
Sbjct: 66  GPRFLGLMKRLAGLLLGVVVGTLLVGAWLGGDAPRQATGVLGLALVAYALLGLAAIPLHL 125

Query: 134 ARRDEKWIGGIVGIITGLISAATGVQVIPSMPFMQAIGMEKDELVQALGVFFTTATVALA 193
             R E W G +VG+ TG ++A TGV VIP++P++ A+G+++DELVQALG+ F+ +T+ALA
Sbjct: 126 PARHEPWAGPLVGLATGALTAVTGVFVIPAVPYLGALGLQRDELVQALGLSFSASTLALA 185

Query: 194 FNLTASGLLTATTALPGA-VAMAASFIGMFIGQAVRTRMQPEVFRRWFLI 242
             L   G L     L  + + +  +  GM +GQ +R R+   +FRR F +
Sbjct: 186 VTLGVHGDLLEPQMLGASLLTLVPALGGMLLGQWLRQRISATLFRRCFFV 235


>AGc4214 [R] COG0730 Predicted permeases Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 276

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/235 (40%), Positives = 144/235 (61%)

Query: 17  LIFIAFAFLLAGFVKGTLGLGLPTVAMGLLATTMAPGQAIAIVIVPAIVTNIWQTFVGPY 76
           L+ +   F++AG VKG  G+GLPTVAMG+L   M P  A  ++I+P+ +TNIWQ   GP 
Sbjct: 35  LLMVLATFIVAGIVKGVTGMGLPTVAMGVLGLFMPPVAAAGLLILPSFITNIWQLLAGPD 94

Query: 77  LRDIIKRLWPLMLGTVAGIWINAGLLTGPYAAYGTVVLGVLLVIYAIVGLSRLSFKVARR 136
            R I+KRLWP+M+  + G  I   L+T     + T  LG+ L  YA   L      +  R
Sbjct: 95  FRAIVKRLWPMMIAIIVGTLIGIRLMTAGTGIWTTSALGLCLAAYAAYSLLARPVSIPAR 154

Query: 137 DEKWIGGIVGIITGLISAATGVQVIPSMPFMQAIGMEKDELVQALGVFFTTATVALAFNL 196
            E  +  ++G++TGL++  TG+ V+P++P++Q++G  +D+LVQALG+ FT +TVALA  L
Sbjct: 155 LESKLSPVMGLVTGLLTGGTGIFVVPAVPYIQSLGFNRDDLVQALGLSFTVSTVALAAGL 214

Query: 197 TASGLLTATTALPGAVAMAASFIGMFIGQAVRTRMQPEVFRRWFLISMILLGIYL 251
            +            A+A+  +  GM++GQ +R  + P  FRRWFLI +++LG+ L
Sbjct: 215 ASQNAFHVEHLSLSALAVLPALAGMWLGQKIRYVVSPATFRRWFLICLLVLGVEL 269