BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0002.p (704 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20815 [M] COG2982 Uncharacterized protein involved in outer m... 174 8e-43 VC1039 [M] COG2982 Uncharacterized protein involved in outer mem... 106 2e-22 YPO1526 [M] COG2982 Uncharacterized protein involved in outer me... 71 9e-12 >SMb20815 [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis Sme Sinorhizobium meliloti Length = 555 Score = 174 bits (440), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%) Query: 242 PAAIKANADARLNGTVVMFNGVSGTLGDGGFTGWASVDFASNKPL-VKLDLDFQRIAIAM 300 P A + DA G V F S ++ G SV+F + PL + L+F + +A Sbjct: 108 PLAFNGHVDAGATG--VSFQEASISVNSVEGAGSGSVEFTA--PLKIMTALNFDELDLAQ 163 Query: 301 PPG-QSGSTQPLGTNIWSNASI--DLAGLNYVDAQARISATELVIGDGRFAQAAIDASID 357 G QS + Q A + DL+ L +DA +++A +L G A + Sbjct: 164 LAGAQSPALQAKAATGAEPADVPLDLSALRSIDATIKVNAKKLGYGKVFAGPVATSLVVS 223 Query: 358 SGVLKGRLANLGAYEGTANGDVTIDARGATPTYALRLDLAGARALPMLRSLAEFDKLDGR 417 GV L Y G + D+ + P+ AL+ ++GA A P+L +A F L+G Sbjct: 224 DGVASLTLPEAPFYGGHVVASLRADSSQSEPSIALKTSISGASAAPLLTDMAGFKHLEGS 283 Query: 418 MQAKIALTSQGGSERAIVGNLAGTAFVVFQDGKILGLNVAQMIRSLTTSTLSGWQASQEL 477 ++A+ +T G + A+ +L G A V F DG I G+++A + +L + SG++ + Sbjct: 284 LKAEFDVTGAGRTSGALAKSLQGNANVGFSDGAIRGIDIANVYNNLVSLMTSGFKQDESK 343 Query: 478 STDLSQLSASFKVDKGQAVTTDLNLIGPLVKMTGVGTIDLNTRQIGFRVEPQLVMTTEGQ 537 +T ++L ASF ++ G A T DL L+GPL++MTG G DL + FR+EP+LV + +GQ Sbjct: 344 ATTFTELGASFAIEGGVARTEDLKLVGPLIRMTGNGAADLAQSTLNFRLEPRLVASLKGQ 403 Query: 538 GRAGNPVGLGIPVMLEGPWVSPRIYPEMQGILDNPQAAYAKLKEMG 583 G + G+G+PV++EG + +PRIYP++ +L NP AA AKLK+ G Sbjct: 404 GAEISTDGIGVPVVVEGSFAAPRIYPDLSDLLKNPDAALAKLKDFG 449 >VC1039 [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis Vch Vibrio cholerae Length = 703 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 15/281 (5%) Query: 313 TNIWSNASIDLAGLNYVDAQARISATELVIGDGRFAQAAIDASIDSGV--LKGRLANLGA 370 TN + DL+ L +D IS + + + +++ GV LK ANL Sbjct: 406 TNAPAEVEPDLSALKALDVAGEISIDKFKASNAHLQNVKANFAVNRGVVDLKSFTANL-- 463 Query: 371 YEGTANGDVTIDARGATPTYALRLDLAGARALPMLRSLAEFDKLDGRMQAKIALTSQGGS 430 Y+G+ +DAR TY+++ + G + P+L+ + + L+G + + Q + Sbjct: 464 YQGSVQASAQVDARKTPATYSVKKQIKGVQVKPLLKDVLNNEMLEGTGNIDVNVQGQSLT 523 Query: 431 ERAIVGNLAGTAFVVFQDGKILGLNVAQMIRSLTTSTLSGW---QASQELSTDLSQLSAS 487 I NL GT + F DG + G+NVA +IR+ + + G +A TD S ++ + Sbjct: 524 PSGIQKNLVGTVAINFADGAVKGINVAHLIRT-HYAKIKGQNVEEADAVKKTDFSAMTTT 582 Query: 488 FKVDKGQAVTTDLNLIGPLVKMTGVGTIDLNTRQIGFRVEPQLVMTTEGQ-GRAGNPV-G 545 K++KG+ T DLN+ PL+++ G G + + + F V +V T EGQ G++ + + Sbjct: 583 LKLNKGEVTTNDLNMQSPLLRIHGEGKANYLQQNVDFLVRTSIVGTLEGQGGKSLDELRD 642 Query: 546 LGIPVMLEGPWVSPRIYPEMQGILDNPQAAYAKLKEMGKGL 586 + IP+ + G W P+ + + D+ AK KE+ +G+ Sbjct: 643 VTIPINISGAWSDPK----FRLVFDDVLKQKAK-KEVDRGV 678 >YPO1526 [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis Ype Yersinia pestis Length = 618 Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 126/603 (20%), Positives = 245/603 (40%), Gaps = 62/603 (10%) Query: 33 VIVIIALVAAVGI------PSSFLTSAITDRVERETGYKLTINGGAKIGLWPRVNLTLSD 86 VI++I LVA + P+ F + + +VE+++GY L + G + +WP++++ Sbjct: 9 VILLIVLVAGMSALVLLVNPNDF-RAYMVKQVEKKSGYHLQLEGDLRWHVWPQLSIIAGR 67 Query: 87 VVLQDPRGRDVNNRFAASSVEAEMTLSSLWSGQPDITDLAIVKPVINLPLQRERTRDHNP 146 + L P + +A ++ ++ L L S Q D+ + + VI L E + + Sbjct: 68 MALTAPGA--LEPVVSAENMRLDVKLWPLLSHQLDVKQVMLKGAVIRLTPDSEAQQQIDA 125 Query: 147 PA-------KSSASDASGIT--IRHVSISGGTIVFSNVRDRVENRIETLNADATIGDDRK 197 P + SD G T I + I+ +++ D + + +N + G R+ Sbjct: 126 PVAPIAPAGSTPVSDNRGWTLDINRLQIADSLLIWQR-SDNDQINVRDINLELKQGGQRQ 184 Query: 198 IVVTGDAQAG----DKPLRFEIRATAPQAPLERQSVPAEFSIDAPGL-LPA-------AI 245 + VT ++ D I A Q P + + ++F+ G +PA A+ Sbjct: 185 VQVTLASRVNRNQRDLTFSMVIDADMHQYPRQFSANISQFTYKLEGADIPAGGISGGGAL 244 Query: 246 KANADARLNGTVVMFNGVSGTLGDGGFTGWASV------DFASNKPLVKLDLDFQRIAIA 299 +A+ + + ++ N ++ T + G D+ N L +L+ I Sbjct: 245 EASYQSDIQQ--LLLNQLNFTANNNQLAGSVKATFGDVPDYVVN--LTSDNLNLDAIFGW 300 Query: 300 MPPGQSGST----QPLGT------NIWSNASIDLAGLNYVDAQARISATELVIGDGRFAQ 349 P + ST QP+ T I + +L L AQ + A +V + Q Sbjct: 301 QPKSSTASTDEAKQPVTTAPVIAIQIDDDVGQNLQALRDFTAQTTVVANNVVYRNININQ 360 Query: 350 AAIDASIDSGVLKGRLANLGAYEGTANGDVTIDARGATPTYALRLDLAGARALPMLRSLA 409 + A+ G L+ A EG + +D G + + P+L++ Sbjct: 361 LNLQATNQQGDLQVTRLTGNALEGDFSLAGALDVTGKKVLATVNPLINHMELGPVLQAAG 420 Query: 410 EFDKLDGRMQAKIALTSQGGSERAIVGNLAGTAFVVFQDGKILGLNVAQMIR---SLTTS 466 + G+ + L+ G + A G A V + ++ GLN+ Q+I+ + +T+ Sbjct: 421 LPQVMTGKFSMQAQLSGDGVNLAAFKHRWRGEAQVSMNNARLQGLNIQQLIQQAVTRSTN 480 Query: 467 TLSGWQASQELSTDLSQLSASFKVDKGQAVTTDLNLIGPLVKMTGVGTIDLNTRQIGFRV 526 + G Q E T++ QL AS +++G + LN L+ + G G ++L T+Q + Sbjct: 481 DVKG-QERYERYTEVKQLQASLALNRGAVKVSGLNASSSLISVKGSGGLNLPTQQCDMNL 539 Query: 527 EPQLVMTTEGQGRAGNPV-GLGIPVMLEGPWVSPRIYPEMQGILDNPQAAYAKLKEMGKG 585 +++ GQ + IP+ + GPW ++ L+ Q ++L++ K Sbjct: 540 AVRVMQGWNGQSSLVKTLQNTDIPLRIYGPWT------QLNYQLNVDQLLRSELQQRAKK 593 Query: 586 LFG 588 G Sbjct: 594 ALG 596