BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0205.0018.p         (143 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2159 [R] COG0517 FOG Pae Pseudomonas aeruginosa                     131   6e-31
SMb21441 [R] COG0517 FOG Sme Sinorhizobium meliloti                   124   7e-29
PA2192 [R] COG0517 FOG Pae Pseudomonas aeruginosa                     119   3e-27
BH2605 [R] COG0517 FOG Bha Bacillus halodurans                        102   3e-22
BS_ylbB [R] COG0517 FOG Bsu Bacillus subtilis                         100   2e-21

>PA2159 [R] COG0517 FOG Pae Pseudomonas aeruginosa
          Length = 138

 Score =  131 bits (329), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 94/128 (73%), Gaps = 2/128 (1%)

Query: 1   MKVCDAMTPDVQLCTPDDTLRDAAEAMAALGVGLLPVADGERLVGMITDRDIALRGIGMG 60
           MK+ D MT +VQ+  P  ++R+AA  MA +  G L V +G+RLVGMITDRDIA+R +  G
Sbjct: 1   MKISDIMTRNVQVADPQQSIREAAATMARIDSGALLVGEGDRLVGMITDRDIAIRAVAGG 60

Query: 61  RGPDSRVGDVMTAEVKYCFEDQELEDIAQNMGAIQVRRLPVLSRDKRLVGIIALGDIALI 120
              D+ +G +M+ ++ YCFED++++ +A+NM  IQ+RRLPVL+R+KRLVG+++LG+IA  
Sbjct: 61  LSGDTPLGRIMSGDIHYCFEDEDVQHVARNMADIQMRRLPVLNREKRLVGVVSLGNIASC 120

Query: 121 --QASDGT 126
             QAS  T
Sbjct: 121 RDQASSAT 128


>SMb21441 [R] COG0517 FOG Sme Sinorhizobium meliloti
          Length = 120

 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 81/116 (69%), Gaps = 1/116 (0%)

Query: 27  MAALGVGLLPVADGERLVGMITDRDIALRGIGMGRGPDSRVGDVMTAEVKYCFEDQELED 86
           MA   +G +PV D +RL+GMITDRDI +RG+  G  P +RV D+MT +VKYCF+D E++D
Sbjct: 1   MAENDIGFMPVGDDDRLIGMITDRDIVVRGVADGMDPQARVADIMTTDVKYCFDDDEVDD 60

Query: 87  IAQNMGAIQVRRLPVLSRDKRLVGIIALGDIALIQASDGTGMALSQISRPTTQHAQ 142
           +A+NMG IQVRRLPV++ DK+LVGI++L D A  Q     G  L  ++ P   H Q
Sbjct: 61  VARNMGDIQVRRLPVVNHDKQLVGIVSLADAAREQPQ-MAGTGLKGVTEPGGSHNQ 115


>PA2192 [R] COG0517 FOG Pae Pseudomonas aeruginosa
          Length = 137

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 90/135 (66%)

Query: 1   MKVCDAMTPDVQLCTPDDTLRDAAEAMAALGVGLLPVADGERLVGMITDRDIALRGIGMG 60
           MKV + M+ +V+  TP  TL +AA  M    +G L V +GERL G++TDRD+A+RG+  G
Sbjct: 1   MKVREIMSREVRTVTPQTTLGEAALLMRQADIGALLVNEGERLTGVVTDRDLAVRGLADG 60

Query: 61  RGPDSRVGDVMTAEVKYCFEDQELEDIAQNMGAIQVRRLPVLSRDKRLVGIIALGDIALI 120
            G D  V +VM+ E++YCFED+E++ + +NM  ++ RRLPV+ R+KRLVGI++L +IA  
Sbjct: 61  LGADRPVREVMSGELRYCFEDEEVDHVTKNMAQLEKRRLPVMDRNKRLVGIVSLANIATC 120

Query: 121 QASDGTGMALSQISR 135
                +   L  ++R
Sbjct: 121 NTDKLSANLLRGVAR 135


>BH2605 [R] COG0517 FOG Bha Bacillus halodurans
          Length = 142

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 2/135 (1%)

Query: 5   DAMTPDVQLCTPDDTLRDAAEAMAALGVGLLPVADGERLVGMITDRDIALRGIGMGRGPD 64
           D MT DV  C+PDD + + A  M    VG +P+ + E+L+GM+TDRDI +R +   +   
Sbjct: 6   DVMTTDVDYCSPDDNIFEVAVKMERDNVGAVPICEEEQLLGMVTDRDIVIRSVAKKKPNS 65

Query: 65  SRVGDVMTAEVKYCFEDQELEDIAQNMGAIQVRRLPVLSRDKRLVGIIALGDIALIQASD 124
           + V +VM+  +     D  +++ A+ M   Q+RRLPV+  + RLVGI +LGD+A+  +SD
Sbjct: 66  TPVKEVMSEHLVTATPDMTVQEAAKLMATKQIRRLPVV-ENNRLVGICSLGDLAVRDSSD 124

Query: 125 G-TGMALSQISRPTT 138
              G+ALS+IS P+ 
Sbjct: 125 HQAGIALSEISEPSN 139


>BS_ylbB [R] COG0517 FOG Bsu Bacillus subtilis
          Length = 150

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 2   KVCDAMTPDVQLCTPDDTLRDAAEAMAALGVGLLPVAD--GERLVGMITDRDIALRGIGM 59
           K+ D MT D+Q CT  D + +AA  M    VG +PV D  GE LVG++TDRD+ LRGI +
Sbjct: 3   KIKDLMTADLQYCTVLDNVYEAAVKMKDANVGAIPVVDEDGETLVGIVTDRDLVLRGIAI 62

Query: 60  GRGPDSRVGDVMTAEVKYCFEDQELEDIAQNMGAIQVRRLPVLSRDKRLVGIIALGDIAL 119
            +    ++ D MT +     ED  ++++   M + Q+RR+PV +++K+L GI+ LGD++L
Sbjct: 63  KKPNSQKITDAMTEKPVSVEEDASVDEVLHLMASHQLRRIPV-TKNKKLTGIVTLGDLSL 121

Query: 120 I-QASDGTGMALSQISR 135
             Q ++  G ALS IS 
Sbjct: 122 SEQTNERAGSALSDISE 138