BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0204.0012.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc2712 [D] COG0239 Integral membrane protein possibly involved ...   120   7e-28
SMc01274 [D] COG0239 Integral membrane protein possibly involved...   119   1e-27
CC1981 Non COG                                                        104   4e-23
mlr0333 [D] COG0239 Integral membrane protein possibly involved ...    89   3e-18
PH1502 [D] COG0239 Integral membrane protein possibly involved i...    84   1e-16

>AGc2712 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 125

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 85/119 (71%)

Query: 6   LAAVAIGGSLGSVARYLVAIGAGRLVGTEFPWGTLVINIVGSFLIGVLAESFALSWNASQ 65
           +A VA GG++GSV RYLV + + RL G  FPWGTL +NIVGSFLIG+L E  A   NAS 
Sbjct: 4   IALVATGGAIGSVFRYLVGVWSMRLAGPNFPWGTLAVNIVGSFLIGLLVELVARRLNASI 63

Query: 66  AIRVFLTIGICGGFTTFSTFSLDAIVLMQRGELWSAGAYIAASVALSILALFGGLLLVR 124
            +R+FL  G+ GGFTTFS+FSLDA+ L +RG L  +  YI AS+ +SI A+F GL L R
Sbjct: 64  EMRLFLVTGVLGGFTTFSSFSLDAVSLFERGALGLSAFYILASLVVSIAAVFAGLALGR 122


>SMc01274 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Sme Sinorhizobium meliloti
          Length = 125

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 80/117 (68%)

Query: 9   VAIGGSLGSVARYLVAIGAGRLVGTEFPWGTLVINIVGSFLIGVLAESFALSWNASQAIR 68
           V  GG+LGSV RYLV +   +  G  FPWGTL +N+ GSFLIG LAE       AS  +R
Sbjct: 7   VGAGGALGSVLRYLVGLWMLQRAGPAFPWGTLFVNVTGSFLIGFLAEFIMHKMGASPEMR 66

Query: 69  VFLTIGICGGFTTFSTFSLDAIVLMQRGELWSAGAYIAASVALSILALFGGLLLVRA 125
           VFL  G+ GG+TTFS FSLDAI L++ G+  S  AYI ASV LS+LA+F GL L+RA
Sbjct: 67  VFLITGVLGGYTTFSAFSLDAIALLEHGQTMSGLAYIVASVGLSMLAVFAGLALMRA 123


>CC1981 Non COG
          Length = 127

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 82/117 (70%), Gaps = 1/117 (0%)

Query: 9   VAIGGSLGSVARYLVAIGAGRLVGTEFPWGTLVINIVGSFLIGVLAESFALSWN-ASQAI 67
           VA GG++GSVARYLV +GA R++G  +P+GT  +N+VG FL+G LA   A   N +S+  
Sbjct: 7   VAAGGAVGSVARYLVGVGAMRVMGPGWPYGTFTVNVVGGFLMGCLASWLAHRGNTSSETW 66

Query: 68  RVFLTIGICGGFTTFSTFSLDAIVLMQRGELWSAGAYIAASVALSILALFGGLLLVR 124
           RV L +G+ GGFTTFS+FSL+  +++Q+     A  Y AASV L+I ALF GLL+ R
Sbjct: 67  RVMLGVGVLGGFTTFSSFSLETALMIQKRAYGQAFTYSAASVLLAIAALFAGLLVAR 123


>mlr0333 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Mlo Mesorhizobium loti
          Length = 124

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 69/111 (62%), Gaps = 1/111 (0%)

Query: 15  LGSVARYLVAIGAGRLVGTEFPWGTLVINIVGSFLIGVLAESFALSWNASQAIRVFLTIG 74
           +G+  R+L  +GA RLVG  +PWGT+ INIVGSF +G+     A     S  +R+F+  G
Sbjct: 13  IGAGIRHLTNMGALRLVGPNYPWGTMAINIVGSFAMGLFIAILARR-GGSNEVRLFVATG 71

Query: 75  ICGGFTTFSTFSLDAIVLMQRGELWSAGAYIAASVALSILALFGGLLLVRA 125
           I GGFTTFS FSLD   L +RG    A  Y  ASV  +I+ALF GL L R+
Sbjct: 72  IFGGFTTFSAFSLDFATLWERGATLPAFGYALASVIGAIIALFLGLWLARS 122


>PH1502 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Pho Pyrococcus horikoshii
          Length = 123

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 4/125 (3%)

Query: 1   LNVQLLAAVAIGGSLGSVARYLVAIGAGRL-VGTEFPWGTLVINIVGSFLIGVLAESFAL 59
           +N +++A + IGG LG++ RY ++   G L V  +FP GTL++N + SFL+G +      
Sbjct: 1   MNAKIIALLIIGGGLGALTRYYIS---GVLPVYKDFPIGTLIVNSLASFLLGYIYGLLFS 57

Query: 60  SWNASQAIRVFLTIGICGGFTTFSTFSLDAIVLMQRGELWSAGAYIAASVALSILALFGG 119
            ++ S   R+FL  G CGG +TFSTFS +   L++ GE+W A A I  ++ ++I  +F G
Sbjct: 58  GFDISPEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEIWLAFANITTNILVTIFLVFLG 117

Query: 120 LLLVR 124
            +L R
Sbjct: 118 FILAR 122