BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0006.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb21210 [TK] COG0745 Response regulators consisting of a CheY-l... 175 9e-44 AGl2108 [TK] COG0745 Response regulators consisting of a CheY-li... 173 3e-43 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 172 4e-43 ECs3907 [TK] COG0745 Response regulators consisting of a CheY-li... 169 6e-42 AGc4608 [TK] COG0745 Response regulators consisting of a CheY-li... 169 6e-42 >SMb21210 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 223 Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 97/220 (44%), Positives = 142/220 (64%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MRLL+VED+ L+ L+ + AG+ D V ++ +A A+ + + ++LDLGLPDGDGL Sbjct: 1 MRLLLVEDSPRLTELINETMHDAGWRLDGVSTLRDAEAAIAAREHDLVLLDLGLPDGDGL 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 +L +RR+ LPVL++TARG V +R++GL +GADDYL KPF EL++R A+LRR Sbjct: 61 QLLQWIRREHVGLPVLIITARGSVDERIAGLDAGADDYLVKPFHHRELLSRCRAMLRRNP 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 + L+ L YD + ++ +GA RE S++EILLR GRVVPK+ +E + Sbjct: 121 NAIQPVLEAGALRYDPATAELTCEGAVLPLPPRERSLIEILLREVGRVVPKRRLETALSE 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLM 220 E++SNA+E+ VSR+RK L V I T+RG+GYL+ Sbjct: 181 YGQELSSNALELAVSRVRKRLQSVETGVQIETVRGIGYLL 220 >AGl2108 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 244 Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 143/220 (65%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MRLL+VED E++ L++ L D V ++ AR A+ + ++LD LPDGDG+ Sbjct: 21 MRLLLVEDEREMAAALSAALHRFDIIVDTVGTLDLARHAIMDSVHDLVVLDRQLPDGDGI 80 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 ++ +LR PV+VLTA+GG+ DR++GL GADDYLAKPFA+EEL+AR+ A++RRP Sbjct: 81 QLIEDLRLLPVTPPVIVLTAQGGLADRINGLNLGADDYLAKPFAVEELLARIRALMRRPA 140 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 + + +L L + E+++V + G + RE +LE LLRRQGR V + +E+ ++ Sbjct: 141 GTVKMTARLGALEFCFETREVRIKGEFLPLTRRELLILEALLRRQGRTVLRSMLEEAVYN 200 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLM 220 E+ SNA++ ++SRLR+ LA A V +H IRGVGYLM Sbjct: 201 FDDEIQSNALDSHISRLRRKLAAADAGVEVHGIRGVGYLM 240 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/221 (45%), Positives = 142/221 (64%), Gaps = 4/221 (1%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MR+L+VED+ +L+ + L AG+ D++ A AL S YA ILD+GLP DG Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 VL+ LR + LPVL+LTARG V+DRV GL GADDYLAKPF L EL AR++A+LRR Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRS- 119 Query: 121 QLLGSSL-KLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIF 179 L G L + L+YD +++ +D P ++RE +VLE ++ R GRV+ K+ + +F Sbjct: 120 VLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVF 179 Query: 180 GLSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLM 220 GL E +++A+E+YV RLRK L +++ T RG+GYL+ Sbjct: 180 GLDEEASADAIEIYVHRLRKKLEGGAVRIV--TFRGLGYLL 218 >ECs3907 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 219 Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 4/223 (1%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MR+L++ED++ + + +GL G+ D + ++AL S Y A+ILDL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 +L E R K PVL+LTAR +++RV GLR GADDYL KPFAL E+ ARLEA++RR Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 + L+ N++ D + + G P +E ++LE+L+R GRV+P+K +E+ ++ Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLMAEE 223 EV SNAVEV+V LR+ L I T+ G+GY + E+ Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 >AGc4608 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 224 Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 139/220 (63%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MR+L++ED E++R L L +D V ++++A R SY ++LD LPDG+GL Sbjct: 1 MRILLLEDEPEMARALLEALRRRDVLADHVSTISDADALARDGSYDVLVLDRRLPDGEGL 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 ++++ LRR + +P+LVLTA G V RV GL +GADDYLAKPFA+EEL+ARL A+ RR Sbjct: 61 NLVASLRRSKNSVPILVLTALGNVDHRVDGLDAGADDYLAKPFAIEELLARLRALHRRGP 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 L + NL D S +V V G+ RE VLE L+RR R+V + ++ + ++ Sbjct: 121 SLADKYTRFGNLGIDPRSNEVSVAGSSIELRRREYLVLEALMRRPNRIVTRSSLIEAVYT 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLM 220 L E+ SNA++ ++SR+RK LA+ A V I +R +GYL+ Sbjct: 181 LDDEIESNALDAHISRIRKKLAQAEATVEIRAVRNIGYLV 220