BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0005.p (362 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl2908 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound t... 440 e-123 mlr5166 Non COG 407 e-113 SMc04251 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound ... 397 e-110 AGc426 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound tr... 397 e-110 AGpA385 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound t... 360 2e-99 >AGl2908 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 365 Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/356 (60%), Positives = 267/356 (75%) Query: 1 MKRRDFIKVTGLGVAGAATIAAPAIAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGE 60 M RR F+K L A A +AAPAIAQ ++ WR+ +S+PKSLDT+YGGAE +AK V Sbjct: 1 MDRRSFMKKGALAGAAATALAAPAIAQQNTKINWRLTSSFPKSLDTIYGGAEDIAKHVAA 60 Query: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNM 120 ATD F IQ FAAGEIVPGLQ DAV +GTVE+ HT SYYY GKDPTF G+A+PFG N Sbjct: 61 ATDGNFTIQPFAAGEIVPGLQAADAVSSGTVEMCHTCSYYYVGKDPTFAIGTAIPFGLNA 120 Query: 121 RINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGG 180 R+ +W+ G G +LN FY K+N+ +++GNTG QMGGWFRKEI +VDD KG+K RI G Sbjct: 121 RLTNSWFYEGNGNKLLNEFYAKHNLYGMISGNTGAQMGGWFRKEINTVDDFKGVKMRIAG 180 Query: 181 FAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWE 240 AG+V++KLG VPQQIAGGDIYPALEKGTIDAAEWVGPYDD +LGF KVA +YYYP +WE Sbjct: 181 LAGKVVEKLGVVPQQIAGGDIYPALEKGTIDAAEWVGPYDDHKLGFQKVAKYYYYPAFWE 240 Query: 241 GGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHA 300 GGP++ SFVNLDKWN+LPK YQ VL+ A +AN MMAKYD NP A+K+L++ GA L Sbjct: 241 GGPVIHSFVNLDKWNSLPKNYQMVLQDACAFANTSMMAKYDAKNPIAIKQLVSEGAVLRP 300 Query: 301 FPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFM 356 F ++EA +KAA E++ +SA+N DFKK+YE +F GY W Q+AE +D FM Sbjct: 301 FSQEILEACYKAALEVYANISASNPDFKKIYEDQVAFKREGYLWMQLAEYTFDTFM 356 >mlr5166 Non COG Length = 369 Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/330 (60%), Positives = 239/330 (72%) Query: 27 QSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGEATDNKFQIQTFAAGEIVPGLQVLDAV 86 QS P++ WR+ +S+PKSLDT+YGGAEV +KM+ EATD FQIQ FAAGE+VPGLQ DA Sbjct: 31 QSNPKVTWRLASSFPKSLDTIYGGAEVFSKMLSEATDGNFQIQVFAAGELVPGLQAADAT 90 Query: 87 QNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNMRINQAWYMLGGGRDMLNTFYKKYNVV 146 GTVE HT +YYY+GKDPT+ G+AVPF N R AW+ GGG D+ N F + Sbjct: 91 TAGTVEACHTVAYYYWGKDPTWALGAAVPFSLNARGMNAWHYHGGGIDLFNEFLATQGLF 150 Query: 147 SLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGGFAGRVMQKLGAVPQQIAGGDIYPALE 206 L GNTG QMGGWFRKEI +V DL GLK RIGGFAG+V+QKLG VPQQIAGGDIYPALE Sbjct: 151 GLPGGNTGVQMGGWFRKEINTVADLAGLKMRIGGFAGKVVQKLGVVPQQIAGGDIYPALE 210 Query: 207 KGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWEGGPMLLSFVNLDKWNALPKYYQSVLE 266 KGTIDAAEWVGPYDDE+LGF KVAP+YYYPGWWEGGP + N K++ L Y+S+L Sbjct: 211 KGTIDAAEWVGPYDDEKLGFYKVAPYYYYPGWWEGGPTVHLMFNKAKYDELSPAYKSLLR 270 Query: 267 QAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHAFPAPVMEASFKAAKELHNEVSATNAD 326 A A+ M+ KYD NP A+KRL+A GAKL F +M A F+ A E++ E+ A+NA Sbjct: 271 TAAQAADADMLQKYDYVNPAAVKRLVAGGAKLRPFSQEIMAACFEKANEVYAEMEASNAP 330 Query: 327 FKKVYESLNSFASNGYQWFQVAEVGYDNFM 356 FK+++ES+ F Y W QVAE YD FM Sbjct: 331 FKRIWESIKGFRKEHYLWAQVAEYNYDTFM 360 >SMc04251 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Sme Sinorhizobium meliloti Length = 368 Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/359 (58%), Positives = 262/359 (72%), Gaps = 3/359 (0%) Query: 1 MKRRDFIK---VTGLGVAGAATIAAPAIAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKM 57 M RR FIK + GLG A A+ +AAPAIAQ+ P++ WR+ +S+PKSLDT+YGGAEV++K Sbjct: 1 MDRRSFIKHASIGGLGAAAASALAAPAIAQTNPKVTWRLTSSFPKSLDTIYGGAEVLSKY 60 Query: 58 VGEATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFG 117 V EATD FQIQ FAAGEIVPGLQ DA GTVE HT +YYY+GKDPT+ G+AVPF Sbjct: 61 VSEATDGNFQIQVFAAGEIVPGLQAADAAAAGTVEACHTVAYYYWGKDPTWALGAAVPFA 120 Query: 118 PNMRINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFR 177 N R AW+ GGG D+ N F +V GNTG QMGGWFRKEI +V D+KGLK R Sbjct: 121 LNARGMNAWHYHGGGIDLFNEFLGTQGLVGYPGGNTGVQMGGWFRKEIKTVADMKGLKMR 180 Query: 178 IGGFAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPG 237 +GGFAG+VM++LG VPQQ+AGGDIYPALEKGTIDAAEWVGPYDDE+LGF KVAP+YYYPG Sbjct: 181 VGGFAGKVMERLGVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFYKVAPYYYYPG 240 Query: 238 WWEGGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAK 297 WWEGGP + + N ++ LPK YQS+L A + M+ KYD NP A+KRL+AAGAK Sbjct: 241 WWEGGPTVHAMFNKAAFDGLPKAYQSLLRTACQATDANMLQKYDYLNPSAIKRLVAAGAK 300 Query: 298 LHAFPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFM 356 L F ++ A F + +++ E+ A+NA FKK++ES+ +F + + Q+AE YD FM Sbjct: 301 LSPFSPEILSACFDESNKVYAEMEASNAPFKKIWESIKAFRAEYFLNAQIAEYNYDTFM 359 >AGc426 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 367 Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/358 (53%), Positives = 244/358 (68%), Gaps = 2/358 (0%) Query: 1 MKRRDFIKVTGLGVAGAATIAAPAIA--QSMPELKWRMPTSWPKSLDTLYGGAEVMAKMV 58 M RR FI+ G AG A A A Q P++ WRM +S+ K LD L+G +++A V Sbjct: 1 MDRRSFIRKAGAVGAGVTATALAAPAIAQENPKITWRMTSSFTKGLDILFGAGQIVADHV 60 Query: 59 GEATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGP 118 EA+ F IQ FA GEIVP LQ DAV GTVE+ HT SYYY GKDPTF G++VPFG Sbjct: 61 KEASGGNFVIQHFAGGEIVPALQAADAVTAGTVEMAHTCSYYYVGKDPTFALGTSVPFGL 120 Query: 119 NMRINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRI 178 N R AW+ GG ++LN F ++N+ S+L GNTG QMGGWFRKEI ++DDLKGLK RI Sbjct: 121 NARQTNAWFNQAGGNELLNEFLAQHNIYSILLGNTGAQMGGWFRKEINTIDDLKGLKMRI 180 Query: 179 GGFAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGW 238 G G+VMQK+G PQQIAGGD+Y ALEKGTIDA E+VGPYDD++LGF KVA +YYYP W Sbjct: 181 AGLTGQVMQKVGVTPQQIAGGDVYAALEKGTIDATEFVGPYDDQKLGFYKVAKYYYYPAW 240 Query: 239 WEGGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKL 298 WEGGP + +FVNL K+N LP+ Y+ +L+ A + M+ +YD NP ALK L+A GA L Sbjct: 241 WEGGPAVHAFVNLQKFNDLPENYKRILKDACAAGSASMLERYDARNPKALKELVAQGAIL 300 Query: 299 HAFPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFM 356 F +++ KAA++ + E+SA N FKK+YES +F + Y W Q+AE YD +M Sbjct: 301 RPFSQEILDVCHKAAQDTYAEISAKNESFKKIYESQQAFKKDAYLWAQIAEYTYDTYM 358 >AGpA385 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 370 Score = 360 bits (925), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 173/331 (52%), Positives = 225/331 (67%) Query: 25 IAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGEATDNKFQIQTFAAGEIVPGLQVLD 84 IAQS P ++WR+ + +P +LDT+YGGA VMA + T KF IQ F AGEIVPG Q +D Sbjct: 31 IAQSSPSVRWRLTSGFPNNLDTIYGGAVVMANALRAMTGGKFDIQVFQAGEIVPGAQAID 90 Query: 85 AVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNMRINQAWYMLGGGRDMLNTFYKKYN 144 AV+ TVEI HT YY+ GKDPTF GS +PFG N R AW GGG N F Y Sbjct: 91 AVKANTVEISHTCGYYFTGKDPTFAIGSTIPFGLNARQQNAWLYHGGGNGAYNEFLSDYG 150 Query: 145 VVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGGFAGRVMQKLGAVPQQIAGGDIYPA 204 V+ + G TG QMGGW+RKEI ++D+KGLK RI G AG+V+ KLGAVPQQ+ GGDIYPA Sbjct: 151 VIGIPGGATGAQMGGWYRKEIKGIEDIKGLKMRIAGVAGQVLAKLGAVPQQLPGGDIYPA 210 Query: 205 LEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWEGGPMLLSFVNLDKWNALPKYYQSV 264 LE+GTIDAAEWVGPYDDE+LGF ++AP+YYYP +WEGG + FVN D++ ALP Y++ Sbjct: 211 LERGTIDAAEWVGPYDDEKLGFYQIAPYYYYPAFWEGGLTIHFFVNKDQYAALPDEYKAA 270 Query: 265 LEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHAFPAPVMEASFKAAKELHNEVSATN 324 L+ A AN M A YD N A++ L++ G +L P V++A++KA EL++E + Sbjct: 271 LDTACKAANINMQALYDVKNKDAIRSLVSKGTQLRPLPRDVLDAAYKATFELYDEYTQKY 330 Query: 325 ADFKKVYESLNSFASNGYQWFQVAEVGYDNF 355 + K+Y +F Y+WF+VAE YD++ Sbjct: 331 PAWAKIYPGWKTFRDESYEWFRVAEYTYDSY 361