BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0003.p (362 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl2908 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound t... 487 e-137 mlr5166 Non COG 454 e-127 SMc04251 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound ... 454 e-127 AGc426 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound tr... 439 e-123 AGpA385 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound t... 415 e-115 >AGl2908 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 365 Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust. Identities = 241/363 (66%), Positives = 289/363 (79%), Gaps = 1/363 (0%) Query: 1 MKRRDFLK-VSAAGAAATAVAAPAIAQSSPEIKWRLTSSFPKSLDTIYGGAEQVSKYVAE 59 M RR F+K + AGAAATA+AAPAIAQ + +I WRLTSSFPKSLDTIYGGAE ++K+VA Sbjct: 1 MDRRSFMKKGALAGAAATALAAPAIAQQNTKINWRLTSSFPKSLDTIYGGAEDIAKHVAA 60 Query: 60 MTDNKFQIQVFAAGELAPGLQALDATSNGTVEMCHTVSYYYVGKDPTFAIYASVPFGLNA 119 TD F IQ FAAGE+ PGLQA DA S+GTVEMCHT SYYYVGKDPTFAI ++PFGLNA Sbjct: 61 ATDGNFTIQPFAAGEIVPGLQAADAVSSGTVEMCHTCSYYYVGKDPTFAIGTAIPFGLNA 120 Query: 120 RMQNSWWYQGGGEALGNEFFKKFGVIGFPTGNTGTQMGGWFRKEIKTVADMSGLKMRIGG 179 R+ NSW+Y+G G L NEF+ K + G +GNTG QMGGWFRKEI TV D G+KMRI G Sbjct: 121 RLTNSWFYEGNGNKLLNEFYAKHNLYGMISGNTGAQMGGWFRKEINTVDDFKGVKMRIAG 180 Query: 180 IAGQVLQKVGVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFAKVAKYYYYPGFWE 239 +AG+V++K+GVVPQQ+AGGDIYPALEKGTIDAAEWVGPYDD KLGF KVAKYYYYP FWE Sbjct: 181 LAGKVVEKLGVVPQQIAGGDIYPALEKGTIDAAEWVGPYDDHKLGFQKVAKYYYYPAFWE 240 Query: 240 GGPTVHAFANLEKWNALPKGYQAILTNACANANSWMQARYDMQNPTALKRLVAGGTQLRP 299 GGP +H+F NL+KWN+LPK YQ +L +ACA AN+ M A+YD +NP A+K+LV+ G LRP Sbjct: 241 GGPVIHSFVNLDKWNSLPKNYQMVLQDACAFANTSMMAKYDAKNPIAIKQLVSEGAVLRP 300 Query: 300 FTNEVLEACLKATNELWGEISAKNADFKKSVEAMQAYRSDQYLWWQVAEYTFDSFMIRSR 359 F+ E+LEAC KA E++ ISA N DFKK E A++ + YLW Q+AEYTFD+FM+ + Sbjct: 301 FSQEILEACYKAALEVYANISASNPDFKKIYEDQVAFKREGYLWMQLAEYTFDTFMMIQQ 360 Query: 360 TRG 362 G Sbjct: 361 RNG 363 >mlr5166 Non COG Length = 369 Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/337 (64%), Positives = 262/337 (77%) Query: 26 QSSPEIKWRLTSSFPKSLDTIYGGAEQVSKYVAEMTDNKFQIQVFAAGELAPGLQALDAT 85 QS+P++ WRL SSFPKSLDTIYGGAE SK ++E TD FQIQVFAAGEL PGLQA DAT Sbjct: 31 QSNPKVTWRLASSFPKSLDTIYGGAEVFSKMLSEATDGNFQIQVFAAGELVPGLQAADAT 90 Query: 86 SNGTVEMCHTVSYYYVGKDPTFAIYASVPFGLNARMQNSWWYQGGGEALGNEFFKKFGVI 145 + GTVE CHTV+YYY GKDPT+A+ A+VPF LNAR N+W Y GGG L NEF G+ Sbjct: 91 TAGTVEACHTVAYYYWGKDPTWALGAAVPFSLNARGMNAWHYHGGGIDLFNEFLATQGLF 150 Query: 146 GFPTGNTGTQMGGWFRKEIKTVADMSGLKMRIGGIAGQVLQKVGVVPQQLAGGDIYPALE 205 G P GNTG QMGGWFRKEI TVAD++GLKMRIGG AG+V+QK+GVVPQQ+AGGDIYPALE Sbjct: 151 GLPGGNTGVQMGGWFRKEINTVADLAGLKMRIGGFAGKVVQKLGVVPQQIAGGDIYPALE 210 Query: 206 KGTIDAAEWVGPYDDEKLGFAKVAKYYYYPGFWEGGPTVHAFANLEKWNALPKGYQAILT 265 KGTIDAAEWVGPYDDEKLGF KVA YYYYPG+WEGGPTVH N K++ L Y+++L Sbjct: 211 KGTIDAAEWVGPYDDEKLGFYKVAPYYYYPGWWEGGPTVHLMFNKAKYDELSPAYKSLLR 270 Query: 266 NACANANSWMQARYDMQNPTALKRLVAGGTQLRPFTNEVLEACLKATNELWGEISAKNAD 325 A A++ M +YD NP A+KRLVAGG +LRPF+ E++ AC + NE++ E+ A NA Sbjct: 271 TAAQAADADMLQKYDYVNPAAVKRLVAGGAKLRPFSQEIMAACFEKANEVYAEMEASNAP 330 Query: 326 FKKSVEAMQAYRSDQYLWWQVAEYTFDSFMIRSRTRG 362 FK+ E+++ +R + YLW QVAEY +D+FM+ + G Sbjct: 331 FKRIWESIKGFRKEHYLWAQVAEYNYDTFMMVQQRNG 367 >SMc04251 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Sme Sinorhizobium meliloti Length = 368 Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/366 (63%), Positives = 286/366 (78%), Gaps = 4/366 (1%) Query: 1 MKRRDFLK----VSAAGAAATAVAAPAIAQSSPEIKWRLTSSFPKSLDTIYGGAEQVSKY 56 M RR F+K AAA+A+AAPAIAQ++P++ WRLTSSFPKSLDTIYGGAE +SKY Sbjct: 1 MDRRSFIKHASIGGLGAAAASALAAPAIAQTNPKVTWRLTSSFPKSLDTIYGGAEVLSKY 60 Query: 57 VAEMTDNKFQIQVFAAGELAPGLQALDATSNGTVEMCHTVSYYYVGKDPTFAIYASVPFG 116 V+E TD FQIQVFAAGE+ PGLQA DA + GTVE CHTV+YYY GKDPT+A+ A+VPF Sbjct: 61 VSEATDGNFQIQVFAAGEIVPGLQAADAAAAGTVEACHTVAYYYWGKDPTWALGAAVPFA 120 Query: 117 LNARMQNSWWYQGGGEALGNEFFKKFGVIGFPTGNTGTQMGGWFRKEIKTVADMSGLKMR 176 LNAR N+W Y GGG L NEF G++G+P GNTG QMGGWFRKEIKTVADM GLKMR Sbjct: 121 LNARGMNAWHYHGGGIDLFNEFLGTQGLVGYPGGNTGVQMGGWFRKEIKTVADMKGLKMR 180 Query: 177 IGGIAGQVLQKVGVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFAKVAKYYYYPG 236 +GG AG+V++++GVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGF KVA YYYYPG Sbjct: 181 VGGFAGKVMERLGVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFYKVAPYYYYPG 240 Query: 237 FWEGGPTVHAFANLEKWNALPKGYQAILTNACANANSWMQARYDMQNPTALKRLVAGGTQ 296 +WEGGPTVHA N ++ LPK YQ++L AC ++ M +YD NP+A+KRLVA G + Sbjct: 241 WWEGGPTVHAMFNKAAFDGLPKAYQSLLRTACQATDANMLQKYDYLNPSAIKRLVAAGAK 300 Query: 297 LRPFTNEVLEACLKATNELWGEISAKNADFKKSVEAMQAYRSDQYLWWQVAEYTFDSFMI 356 L PF+ E+L AC +N+++ E+ A NA FKK E+++A+R++ +L Q+AEY +D+FM+ Sbjct: 301 LSPFSPEILSACFDESNKVYAEMEASNAPFKKIWESIKAFRAEYFLNAQIAEYNYDTFMM 360 Query: 357 RSRTRG 362 + G Sbjct: 361 IQQRNG 366 >AGc426 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 367 Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/365 (58%), Positives = 262/365 (71%), Gaps = 3/365 (0%) Query: 1 MKRRDFL-KVSAAGAAATAVAAPAIA--QSSPEIKWRLTSSFPKSLDTIYGGAEQVSKYV 57 M RR F+ K A GA TA A A A Q +P+I WR+TSSF K LD ++G + V+ +V Sbjct: 1 MDRRSFIRKAGAVGAGVTATALAAPAIAQENPKITWRMTSSFTKGLDILFGAGQIVADHV 60 Query: 58 AEMTDNKFQIQVFAAGELAPGLQALDATSNGTVEMCHTVSYYYVGKDPTFAIYASVPFGL 117 E + F IQ FA GE+ P LQA DA + GTVEM HT SYYYVGKDPTFA+ SVPFGL Sbjct: 61 KEASGGNFVIQHFAGGEIVPALQAADAVTAGTVEMAHTCSYYYVGKDPTFALGTSVPFGL 120 Query: 118 NARMQNSWWYQGGGEALGNEFFKKFGVIGFPTGNTGTQMGGWFRKEIKTVADMSGLKMRI 177 NAR N+W+ Q GG L NEF + + GNTG QMGGWFRKEI T+ D+ GLKMRI Sbjct: 121 NARQTNAWFNQAGGNELLNEFLAQHNIYSILLGNTGAQMGGWFRKEINTIDDLKGLKMRI 180 Query: 178 GGIAGQVLQKVGVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFAKVAKYYYYPGF 237 G+ GQV+QKVGV PQQ+AGGD+Y ALEKGTIDA E+VGPYDD+KLGF KVAKYYYYP + Sbjct: 181 AGLTGQVMQKVGVTPQQIAGGDVYAALEKGTIDATEFVGPYDDQKLGFYKVAKYYYYPAW 240 Query: 238 WEGGPTVHAFANLEKWNALPKGYQAILTNACANANSWMQARYDMQNPTALKRLVAGGTQL 297 WEGGP VHAF NL+K+N LP+ Y+ IL +ACA ++ M RYD +NP ALK LVA G L Sbjct: 241 WEGGPAVHAFVNLQKFNDLPENYKRILKDACAAGSASMLERYDARNPKALKELVAQGAIL 300 Query: 298 RPFTNEVLEACLKATNELWGEISAKNADFKKSVEAMQAYRSDQYLWWQVAEYTFDSFMIR 357 RPF+ E+L+ C KA + + EISAKN FKK E+ QA++ D YLW Q+AEYT+D++M+ Sbjct: 301 RPFSQEILDVCHKAAQDTYAEISAKNESFKKIYESQQAFKKDAYLWAQIAEYTYDTYMMI 360 Query: 358 SRTRG 362 + G Sbjct: 361 QQRNG 365 >AGpA385 [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 370 Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/339 (58%), Positives = 245/339 (72%) Query: 24 IAQSSPEIKWRLTSSFPKSLDTIYGGAEQVSKYVAEMTDNKFQIQVFAAGELAPGLQALD 83 IAQSSP ++WRLTS FP +LDTIYGGA ++ + MT KF IQVF AGE+ PG QA+D Sbjct: 31 IAQSSPSVRWRLTSGFPNNLDTIYGGAVVMANALRAMTGGKFDIQVFQAGEIVPGAQAID 90 Query: 84 ATSNGTVEMCHTVSYYYVGKDPTFAIYASVPFGLNARMQNSWWYQGGGEALGNEFFKKFG 143 A TVE+ HT YY+ GKDPTFAI +++PFGLNAR QN+W Y GGG NEF +G Sbjct: 91 AVKANTVEISHTCGYYFTGKDPTFAIGSTIPFGLNARQQNAWLYHGGGNGAYNEFLSDYG 150 Query: 144 VIGFPTGNTGTQMGGWFRKEIKTVADMSGLKMRIGGIAGQVLQKVGVVPQQLAGGDIYPA 203 VIG P G TG QMGGW+RKEIK + D+ GLKMRI G+AGQVL K+G VPQQL GGDIYPA Sbjct: 151 VIGIPGGATGAQMGGWYRKEIKGIEDIKGLKMRIAGVAGQVLAKLGAVPQQLPGGDIYPA 210 Query: 204 LEKGTIDAAEWVGPYDDEKLGFAKVAKYYYYPGFWEGGPTVHAFANLEKWNALPKGYQAI 263 LE+GTIDAAEWVGPYDDEKLGF ++A YYYYP FWEGG T+H F N +++ ALP Y+A Sbjct: 211 LERGTIDAAEWVGPYDDEKLGFYQIAPYYYYPAFWEGGLTIHFFVNKDQYAALPDEYKAA 270 Query: 264 LTNACANANSWMQARYDMQNPTALKRLVAGGTQLRPFTNEVLEACLKATNELWGEISAKN 323 L AC AN MQA YD++N A++ LV+ GTQLRP +VL+A KAT EL+ E + K Sbjct: 271 LDTACKAANINMQALYDVKNKDAIRSLVSKGTQLRPLPRDVLDAAYKATFELYDEYTQKY 330 Query: 324 ADFKKSVEAMQAYRSDQYLWWQVAEYTFDSFMIRSRTRG 362 + K + +R + Y W++VAEYT+DS+ +T G Sbjct: 331 PAWAKIYPGWKTFRDESYEWFRVAEYTYDSYGYAMQTAG 369