BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0006.p         (133 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML0112 [GM] COG1682 ABC-type polysaccharide/polyol phosphate exp...    65   4e-11
Rv3783 [GM] COG1682 ABC-type polysaccharide/polyol phosphate exp...    64   7e-11
MT3892 [GM] COG1682 ABC-type polysaccharide/polyol phosphate exp...    64   7e-11
STM0722 [GM] COG1682 ABC-type polysaccharide/polyol phosphate ex...    59   3e-09
Cgl0202 [GM] COG1682 ABC-type polysaccharide/polyol phosphate ex...    57   7e-09

>ML0112 [GM] COG1682 ABC-type polysaccharide/polyol phosphate export
           systems, permease component Mle Mycobacterium leprae
          Length = 276

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 18  VAALPGLVLFVVCTLGLSLVLGALATRYRDIKPIIESSLTLAFLASPIIWTSEMI----- 72
           ++  P L L ++ ++ +SL  G LATRYRDI P++ S + L F  +PIIW  + +     
Sbjct: 155 LSVFPALALVILNSVWVSLCFGILATRYRDIGPLLFSVVQLLFFITPIIWNDDALRQQGE 214

Query: 73  DRGSTVMRLNPLTHLFAIWRDPLATGHVATASVIYVLACLAALAVAAIVTMTHLR-KAAF 131
            R S+++ LNPL H   I R PL   H        V+   AA  + A   M   R +  +
Sbjct: 215 GRWSSIVELNPLLHYLDIVRAPLLGAHQELRHWAVVVTLTAAGWLLAAFAMRQYRARVPY 274

Query: 132 WI 133
           W+
Sbjct: 275 WV 276


>Rv3783 [GM] COG1682 ABC-type polysaccharide/polyol phosphate export
           systems, permease component Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 280

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 21  LPGLVLFVVCTLGLSLVLGALATRYRDIKPIIESSLTLAFLASPIIWTSEMIDRG----- 75
           LP L L  +  + +SL  G LATRYRDI P++ S + L F  +PIIW  E + R      
Sbjct: 162 LPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRW 221

Query: 76  STVMRLNPLTHLFAIWRDPLATGH 99
           S+++ LNPL H   I R PL   H
Sbjct: 222 SSIVELNPLLHYLDIVRAPLLGAH 245


>MT3892 [GM] COG1682 ABC-type polysaccharide/polyol phosphate export
           systems, permease component MtC Mycobacterium
           tuberculosis CDC1551
          Length = 280

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 21  LPGLVLFVVCTLGLSLVLGALATRYRDIKPIIESSLTLAFLASPIIWTSEMIDRG----- 75
           LP L L  +  + +SL  G LATRYRDI P++ S + L F  +PIIW  E + R      
Sbjct: 162 LPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRW 221

Query: 76  STVMRLNPLTHLFAIWRDPLATGH 99
           S+++ LNPL H   I R PL   H
Sbjct: 222 SSIVELNPLLHYLDIVRAPLLGAH 245


>STM0722 [GM] COG1682 ABC-type polysaccharide/polyol phosphate export
           systems, permease component Sty Salmonella typhimurium
           LT2
          Length = 256

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 21  LPGLVLFVVCTLGLSLVLGALATRYRDIKPIIESSLTLAFLASPIIWTSEMIDRG-STVM 79
           +P +V+  +  +   ++L    TRYRD+ P+++S +TL F  +PIIWTSE + +G    +
Sbjct: 142 IPAIVITSISLISTGMILAIFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQLPKGRKEFV 201

Query: 80  RLNPLTHLFAIWRDPLATGHVATASVIY--VLACLAALAVAAIVTMTHLRKAAFWI 133
             N   +   + R PL  G V   ++ +  ++  +  L V+ +V   +  +  +W+
Sbjct: 202 DYNIFYYFMEMLRKPLM-GTVPDVTIWFYTIITSIIMLMVSTLVLTKYRSRIVYWL 256


>Cgl0202 [GM] COG1682 ABC-type polysaccharide/polyol phosphate export
           systems, permease component Cgl Corynebacterium
           glutamicum
          Length = 301

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 12/143 (8%)

Query: 3   LLLWLVLT---PRDVGGAVA-ALPGLVLFVVCTLGLSLVLGALATRYRDIKPIIESSLTL 58
           L++W++L    PR +G  V   +P + L V+  + + +  G +ATRYRD+ P++E+   L
Sbjct: 159 LVIWVILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQL 218

Query: 59  AFLASPIIWTSEMIDRGSTVM-------RLNPLTHLFAIWRDPLATGHVATASVIYVLAC 111
            F  +PI+W +  +   S  +        LNPL H   I R P+    +       VLA 
Sbjct: 219 LFYVTPIVWMTSTLQSQSAEIGNRARLAELNPLYHYLEIVRAPMVGADLPAYHWWIVLAF 278

Query: 112 LAALAVAAIVTMTHLR-KAAFWI 133
                  A++ M   R + ++W+
Sbjct: 279 TFVGLGLALLAMKQWRFRVSYWV 301