BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0202.p         (214 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0788 [O] COG2192 Predicted carbamoyl transferase, NodU family...   111   9e-25
MJ1058 [O] COG2192 Predicted carbamoyl transferase, NodU family ...    97   3e-20
mlr6171 Non COG                                                        95   1e-19
sll1178 [O] COG2192 Predicted carbamoyl transferase, NodU family...    92   6e-19
SMb20472 [O] COG2192 Predicted carbamoyl transferase, NodU famil...    88   1e-17

>RSp0788 [O] COG2192 Predicted carbamoyl transferase, NodU family Rso
           Ralstonia solanacearum
          Length = 581

 Score =  111 bits (278), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 95/177 (53%), Gaps = 14/177 (7%)

Query: 10  VADLMASMVAQGGVIAIYQGAA----RALGHRSILANPCDPLVRERLNERVKYREAIRPL 65
           + D +A  +A G VI   QG+A    R+LG+RSILA+P    ++ER+N  VK+RE  RP 
Sbjct: 406 LCDYVAQELADGKVIGWIQGSAEFGPRSLGNRSILADPRRASMKERINAIVKFREGFRPF 465

Query: 66  APMATLEAARDYFELEDGASDADYNAYNYMVLTAHSKPEARAKIPAVVHADGTGRIQIVR 125
           AP    E    YFE        DY+A  YM  T   +   R  IPAV H D TGR+Q VR
Sbjct: 466 APSILDEFGDRYFE--------DYSATPYMEKTLKIREAYREAIPAVCHVDHTGRLQTVR 517

Query: 126 ETDDPLTHAYLKALGRHIGVEMSVNTSFNVAG-PIAQTPAQAMDTLRRSKGLDAVVL 181
              +P  HA L A     G  + +NTS NV G PI  + A A  T+  S GLD +V+
Sbjct: 518 RDWNPRFHALLSAFHARTGTPVLLNTSLNVMGKPIVHSAADAF-TVFLSTGLDLLVI 573


>MJ1058 [O] COG2192 Predicted carbamoyl transferase, NodU family Mja
           Methanococcus jannaschii
          Length = 609

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 13/161 (8%)

Query: 12  DLMASMVAQGGVIAIYQGAA----RALGHRSILANPCDPLVRERLNERVKYREAIRPLAP 67
           ++ A M+A+G +IA+YQG      RALG+RSILA+P DP  R+++N  VK R   +P  P
Sbjct: 435 EIAAEMIAKGNIIAVYQGKMEFGPRALGNRSILADPRDPKTRDKINSTVKRRPWFQPFCP 494

Query: 68  MATLEAARDYFELEDGASDADYNAYNYMVLTAHSKPEARAKIPAVVHADGTGRIQIVRET 127
               E                   + +M +    K E   K+P+ +H DGT R Q V E 
Sbjct: 495 SVLEEERE--------RLFEKSYKHKHMAIAFRMKKEFWDKLPSAMHIDGTARPQFVEEK 546

Query: 128 DDPLTHAYLKALGRHIGVEMSVNTSFNVAG-PIAQTPAQAM 167
           D+P  +  LK      G  + +NTSFN+ G  I +TP  A+
Sbjct: 547 DNPNYYRLLKKFKEITGYGIVINTSFNLHGRTIVRTPEDAI 587


>mlr6171 Non COG
          Length = 673

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 96/182 (52%), Gaps = 11/182 (6%)

Query: 5   EGRDAVADLMASMVAQGGVIAIYQGAA----RALGHRSILANPCDPLVRERLNERVKYRE 60
           E  + VAD  A  +A G VI   QG +    RALG+RSILA+P     ++R+N  VK RE
Sbjct: 380 ERTEEVADRAAEWMAGGAVIGWVQGRSEFGPRALGNRSILADPRPATNKDRINAMVKKRE 439

Query: 61  AIRPLAPMATLEAARDYFELEDGASDADYNAYNYMVLTAHSKPEARAKIPAVVHADGTGR 120
             RP AP    E AR++F+L   A   ++   N++V    SK   R  + A+ H DGT R
Sbjct: 440 GYRPFAPSVLEEDAREFFDLPGSA--CEFPFMNFVVRVRDSK---RGLLGAITHVDGTAR 494

Query: 121 IQIVRETDDPLTHAYLKALGRHIGVEMSVNTSF-NVAGPIAQTPAQAMDTLRRSKGLDAV 179
           +Q V     P     + A  +  G+ + +NTSF N A PI  + A ++ T   + GLD +
Sbjct: 495 LQTVSRKASPAYWDVINAFKQRTGIPILLNTSFNNNAEPIVDSVADSIATF-LTTGLDGL 553

Query: 180 VL 181
           V+
Sbjct: 554 VV 555


>sll1178 [O] COG2192 Predicted carbamoyl transferase, NodU family Syn
           Synechocystis
          Length = 615

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 34/193 (17%)

Query: 14  MASMVAQGGVIAIYQG----AARALGHRSILANPCDPLVRERLNERVKYREAIRPLAPMA 69
           +A ++A G V+  +QG      RALG RSI+ +P +  ++  +N ++KYRE+ RP AP  
Sbjct: 406 VAHILAGGNVVGWFQGRMEFGPRALGGRSIIGDPRNTTMQSVMNLKIKYRESFRPFAPSV 465

Query: 70  TLEAARDYFELEDGASDADYNAYNYMVLTAHSKPE--------------------ARAKI 109
             E   DYFEL+  +         YM++ A  + E                     R+++
Sbjct: 466 LAEKVGDYFELDQPSP--------YMLIVADVREELRLPLTPEQEQLFGIEKLNIPRSQL 517

Query: 110 PAVVHADGTGRIQIVRETDDPLTHAYLKALGRHIGVEMSVNTSFNVAG-PIAQTPAQAMD 168
           PA+ H D + RIQ V    +P  +  L+         + VNTSFNV G PI  TP  A  
Sbjct: 518 PAITHVDNSARIQTVHPETNPRYYQLLRQFEALTDCGVLVNTSFNVRGEPIVCTPEDAYR 577

Query: 169 TLRRSKGLDAVVL 181
              R++ +D +VL
Sbjct: 578 CFMRTE-MDYLVL 589


>SMb20472 [O] COG2192 Predicted carbamoyl transferase, NodU family Sme
           Sinorhizobium meliloti
          Length = 610

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 86/176 (48%), Gaps = 23/176 (13%)

Query: 8   DAVADLMASMVAQGGVIAIYQGAARALGHRSILANPCDPLVRERLNERVKYREAIRPLAP 67
           DA+ D  A    QG +    +   RALG RSIL +P  P++++ LN +VKYRE+ RP AP
Sbjct: 404 DAIVDEKAVGWMQGRM----EFGPRALGGRSILGDPRSPIMQKTLNLKVKYRESFRPFAP 459

Query: 68  MATLEAARDYFELEDGASDADYNAYNYMVLTAHSKP----EA-----------RAKIPAV 112
               E   ++F+++    D+ Y      VL  H  P    EA           R+ IPAV
Sbjct: 460 SVRREDVAEWFDVD---VDSPYMLLVGDVLDRHRLPLGAGEAALFGIDRLNVPRSGIPAV 516

Query: 113 VHADGTGRIQIVRETDDPLTHAYLKALGRHIGVEMSVNTSFNVAG-PIAQTPAQAM 167
            H D + R+Q V    +P     L A  +  G  + VNTSFNV G PI  TP  A 
Sbjct: 517 THVDYSARVQTVHRDTNPRYWELLSAFKQRTGCPVLVNTSFNVRGEPIVCTPEDAF 572