BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0165.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC0892 [N] COG1291 Flagellar motor component Vch Vibrio cholerae 177 3e-44 TM0676 [N] COG1291 Flagellar motor component Tma Thermotoga mari... 138 1e-32 BH3240 [N] COG1291 Flagellar motor component Bha Bacillus halodu... 135 1e-31 BS_ytxD [N] COG1291 Flagellar motor component Bsu Bacillus subtilis 132 7e-31 BB0281 Non COG 129 4e-30 >VC0892 [N] COG1291 Flagellar motor component Vch Vibrio cholerae Length = 254 Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 154/252 (61%), Gaps = 9/252 (3%) Query: 1 MDIMTGAGLLAGIIVIAVMMFMGGDLHMFISEHAMIIIFGGSIAATMIRFPLGVMLHGLP 60 MD+ T GL+ G+ + + M +GG + MF+ +++I+ GGS+ +++F +G Sbjct: 1 MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60 Query: 61 LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE 120 + K AF + DL+ ++ +A+ ARK G + LE++E PF+ KGI + DG+D + Sbjct: 61 IAGK-AFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDAD 119 Query: 121 FIRDNMERDRDNFLMHLDE----GSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKL 176 +R +++D ++ DE G++++RA GD APA GMIGTL+G+V M +NM DP + Sbjct: 120 VVRATLQKD----IVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSI 175 Query: 177 GPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVR 236 GP MA ALL TLYGA+++N+ PIADKL + E NR LI+DG+L I+D ++P ++ Sbjct: 176 GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVID 235 Query: 237 EMLLAYLPEKHR 248 L YL R Sbjct: 236 SYLKNYLNASKR 247 >TM0676 [N] COG1291 Flagellar motor component Tma Thermotoga maritima Length = 262 Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 150/263 (57%), Gaps = 26/263 (9%) Query: 1 MDIMTGAGLLAGIIVIAVMMFMG-----GDLHMFISEHAMIIIFGGSIAATMIRFP---- 51 MD+ T L G++++ +F+G GD FI+ ++ I GSIAATM+ P Sbjct: 1 MDLAT----LMGLVLVIAALFIGILTGGGDFAAFINIPSLFITVVGSIAATMVAHPKDKA 56 Query: 52 ---LGVMLHGLPLGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEK-VET-DEPFL 106 + +ML L +L L+ + +E AR++G + LE+ +E+ ++PF+ Sbjct: 57 FKIVNIMLSTL--------KEPKLDHVSLIQTMVSFSEKARREGLLSLEENLESIEDPFM 108 Query: 107 AKGIRYVADGYDLEFIRDNMERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQM 166 K ++ V DG D + +R+ ME + + F LD + + G APAFGMIGTLIG++QM Sbjct: 109 KKALQLVVDGTDPDLLRNMMETEMELFEEELDGERAVLESAGAYAPAFGMIGTLIGLIQM 168 Query: 167 FANMTDPSKLGPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMI 226 ++ DP LGP MA AL+ TLYGA++AN LP+A+K+ + + +I++ +L I Sbjct: 169 LKSLNDPETLGPSMAVALITTLYGAILANGVFLPMAEKIKKRRDILVLEKRMILEAVLSI 228 Query: 227 RDSKSPALVREMLLAYLPEKHRQ 249 + ++P ++ E L ++LPEK RQ Sbjct: 229 QAGENPRILEEKLKSFLPEKERQ 251 >BH3240 [N] COG1291 Flagellar motor component Bha Bacillus halodurans Length = 269 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 143/262 (54%), Gaps = 15/262 (5%) Query: 2 DIMTGAGLLAGIIVIAVMMFMGGD---LHMFISEHAMIIIFGGSIAATMIRFPLGVMLHG 58 DI+T GL GI V+ + +F + FI +++I+ GG ++A +I F L Sbjct: 5 DILTPVGLFLGITVLLLAVFSNSGPSGIVFFIQISSVLIVIGGIVSALVITFSF-TELKQ 63 Query: 59 LPLGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLE---KVETDEPFLAKGIRYVAD 115 +P AF LV ++ AR++G + LE E ++PF+ KGI D Sbjct: 64 VPRVLMEAFRTQDHDLGKLVQTFVNLSGKARREGLLALEAGLDEEVEDPFIRKGILLAVD 123 Query: 116 GYDLEFIRDNMERDRDNFLMHLDEGSKIYRAIGD----CAPAFGMIGTLIGMVQMFANMT 171 G + + I+D M + + ++E RA+ D APA+GMIGTLIG+V M N+ Sbjct: 124 GIEPDVIKDIMMAE----VTAMEERHTKSRALIDKAAEYAPAWGMIGTLIGLVLMLQNLN 179 Query: 172 DPSKLGPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKS 231 DPS LGP MA ALL TLYG ++ANL LP++ KL K E + +II+G++ ++ ++ Sbjct: 180 DPSTLGPNMAVALLTTLYGTVLANLVFLPMSTKLMNKTDSEVFVKQIIIEGVIGVQSGQN 239 Query: 232 PALVREMLLAYLPEKHRQEEGE 253 P ++ E L A++ +K ++ + E Sbjct: 240 PKILEEKLSAFITKKDKEADEE 261 >BS_ytxD [N] COG1291 Flagellar motor component Bsu Bacillus subtilis Length = 272 Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 3/229 (1%) Query: 29 FISEHAMIIIFGGSIAATMIRFPLGVMLHGLPLGAKFAFTMSRLSARDLVDELARIAEIA 88 F+ + I+ GG AA I FP L P K AF + +DLV +++ A Sbjct: 35 FLDLTSFFIVTGGLCAAVFISFPPS-ELKKAPSVLKQAFIRQEDNVKDLVKTFVSLSDHA 93 Query: 89 RKQGPVGL--EKVETDEPFLAKGIRYVADGYDLEFIRDNMERDRDNFLMHLDEGSKIYRA 146 RK G + L + E +PFL KG+ DG+D E IR M+ + +G +++ Sbjct: 94 RKHGLLSLDDQAREIKDPFLKKGLLLAIDGWDEETIRLVMDSEIAAMEERHRKGRRVFEK 153 Query: 147 IGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFMATALLATLYGALVANLFCLPIADKLH 206 G+ APA+GMIGTL+G+V M N+ DP LGP MA ALL TLYG+L+AN+ PIA KL Sbjct: 154 AGEFAPAWGMIGTLVGLVLMLKNLNDPHMLGPNMAIALLTTLYGSLLANMVFNPIAAKLE 213 Query: 207 GKLLDEETNRTLIIDGILMIRDSKSPALVREMLLAYLPEKHRQEEGEPV 255 K E + ++++GI+ ++ K+P + L+ + + Q++ + V Sbjct: 214 EKTESEIFIKQVMVEGIIGVQSGKNPRNLESQLVVFSSREEWQKQPKQV 262 >BB0281 Non COG Length = 260 Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 6 GAGLLAGIIVIAVMMFMGGDLHMFISEHAMIIIFGGSIAATMIRFPLGVMLHGLPLGAKF 65 G G+ G I+I+ M F L +F ++ I GS +A M + V + +P F Sbjct: 8 GWGVGFGAILIS-MAFTPTGLGVFWDLSSVFITVVGSFSALMASSEV-VAVKKIPTYLGF 65 Query: 66 AFTMSRLSARDLVDELARIAEIARKQGPVGL--EKVETDEPFLAKGIRYVADGYDLEFIR 123 F + + ++ L ++E ARK+G + L E + ++PF G+R V DG D E IR Sbjct: 66 FFRRNSYAKVSIIKILVELSEKARKEGLLSLDDELEQINDPFFKSGMRLVVDGADPEVIR 125 Query: 124 DNMERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFMATA 183 + + D GS +++ APAFGM GTLIG+V + N+ D S LG MA A Sbjct: 126 TMLYLELDQMQERHKVGSDLFKTWAKLAPAFGMTGTLIGLVALLGNLEDKSALGSSMAVA 185 Query: 184 LLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLLAYL 243 L+ TLYG ++ANL P+ KL +E +T+II+G+L I+ +P ++ + L+ +L Sbjct: 186 LITTLYGTIMANLMFTPVQLKLEKIDTEEAAVKTMIIEGVLSIQSGDNPRILEQKLMTFL 245 Query: 244 PEKHRQE 250 K R + Sbjct: 246 TPKDRSQ 252