BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0142.p         (271 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2376 [K] COG1309 Transcriptional regulator Dra Deinococcus rad...    92   1e-18
CC0992 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    80   4e-15
VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae       62   2e-09
MA2948 [K] COG1309 Transcriptional regulator Mac Methanosarcina ...    61   3e-09
RSp0613 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...    60   5e-09

>DR2376 [K] COG1309 Transcriptional regulator Dra Deinococcus radiodurans
          Length = 197

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 2/190 (1%)

Query: 27  KREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNYFRGKDEILYECWSIGNELVD 86
           +RE +   A  LF E+GYH  ++ ++A +L +   +LY +  GK+E+L E     ++  D
Sbjct: 8   RREQIHDVASRLFSERGYHATSMRDLAGQLGMQGGSLYAHISGKEELLVEIVRGASQQFD 67

Query: 87  DCIAETSAGGGSGLDKLRKLTVRYAELMTADYGKSLVRF-DIRDLSEDNRKIVQTAKRRI 145
           + +           +KLR+   R+ +++  +   + V F + + LS +    V   +  I
Sbjct: 68  EALFSLRDVNLPADEKLREAMFRHIQVVADNMDSATVFFHEWKHLSAEPYAQVVAWRDTI 127

Query: 146 DRAFRDYIAQGVADGSVKP-CDPKLAAFAIAGSLNWIGHWFQPGGELSGRAVAEEFAIRL 204
           D  +RD +AQGV DG+ +   D + AA  I  ++NW   W++PGG LS R VAE+FA  L
Sbjct: 128 DIFYRDLVAQGVRDGTFRADLDVRAAANLILSAVNWTYTWYRPGGRLSPRDVAEQFADML 187

Query: 205 TEGIAKTATQ 214
             G+     Q
Sbjct: 188 LSGLMAGELQ 197


>CC0992 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 210

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 26  EKREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNYFRGKDEILYECWSIGNELV 85
           +KRE +LR A+ +   +G+  AT+ E+A  +++   ALY YF  K  + Y       E  
Sbjct: 25  KKREEILRAAIKIINTKGFAAATMTEIAAAIDLRDAALYYYFPNKQALAYTGHQRSLERF 84

Query: 86  DDCIAETSAGGGSGLDKLRKLTVRYAELMTADYGKSLVRFDIRDLSEDNRKIVQTAKRRI 145
           +  +    AGGG+GL KLR+      E    + G  L   D   L    ++ + T   R+
Sbjct: 85  EAILIAVEAGGGTGLCKLRRFLHAVLEDGVVN-GPQLYFGDHSYLDAAQQRAIDTWTVRL 143

Query: 146 DRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNWIGHW 184
            +    ++ +G+ADG++  C+P+L    + G L W+  W
Sbjct: 144 AKRLERFLEEGMADGTIATCEPRLVVQLLVGMLIWLTKW 182


>VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae
          Length = 200

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 20/177 (11%)

Query: 21  RRARDEKREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNYFRGKDEILYECWSI 80
           R   +EKR+A+L  A   F +QG+ + +++ +AK L  +K  LYNYF  K+EI       
Sbjct: 2   RVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIF------ 55

Query: 81  GNELVDDCIAETSAGGGSGLDKLRKLTVRYAEL--------MTADYGKSLVRFDIR--DL 130
              +++    E  A     LD  R+L     E         +T D   S+ R  I   D 
Sbjct: 56  -TAVMESSATEQIALSFLSLDHNRELKPALLEFGYNFLNSVLTQD-AMSIYRMAIHEADR 113

Query: 131 SEDNRKIVQTAKRRIDRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNWIGHWFQP 187
           S   R   +   +R       YI   +  GS+K CDP +AA      L+    +F+P
Sbjct: 114 SAIGRHFYENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKALLS--AQYFEP 168


>MA2948 [K] COG1309 Transcriptional regulator Mac Methanosarcina
           acetivorans str.C2A
          Length = 230

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 14/156 (8%)

Query: 31  VLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNYFRGKDEILYECWSIGNELVDDCIA 90
           ++  A  LF  +GY   +++E+A  + ++KPALY YF+ K+ + +   + G ++  D   
Sbjct: 18  IINAAEKLFFSRGYDNVSMDEIASEVELSKPALYYYFKDKESLFFAVVNRGVKIFRDITT 77

Query: 91  E---TSAGGGSGLDKLRKLTVRYAELMTADYGKSLV-----RFDI---RDLSEDNRKIVQ 139
           E    S   G  +  +   T R+ +    DY K+ V     RFD+   +DLS D ++I++
Sbjct: 78  EELKNSQTSGLKVGAINLATARFNQ-EYPDYAKAHVHFWSGRFDLSNDKDLSPDAKEIIE 136

Query: 140 TAKRRIDRAFRDYIAQGVADGSVKP-CDPKLAAFAI 174
            +     R     I  G+ DG+ +   +P L A  I
Sbjct: 137 FSCENY-RIIHSIIKNGIEDGTFRSDANPLLTAVLI 171


>RSp0613 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 215

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 9/207 (4%)

Query: 16  PFESRRRARDE---KREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNYFRGKDE 72
           P  SR +  DE   +RE+VL TA   F    Y   ++N++A     +K  LY+Y+ GK+ 
Sbjct: 9   PDMSRVKNEDEFELRRESVLDTAAEAFAADSYASVSMNQIAAACGGSKSRLYHYYEGKEA 68

Query: 73  ILYECWSIGNELVDDCIAETSAGGGSGLDKLRKLTVRYAELMTADYGKSLVRF-----DI 127
           IL++        + D +              R           A+Y  S  R      D+
Sbjct: 69  ILFDLLDRYTRRLADLVERAERDALHARLSARATLHLLIRTFLAEYATSRTRHVALLNDV 128

Query: 128 RDLSEDNRKIVQTAKRRIDRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNWIGHWFQP 187
           + LS + R I+   +R +  A    +A     G V   +       + G +NW   W +P
Sbjct: 129 KYLSPEQRDIILAREREVVAAVGRQLAAAYP-GKVDDANRTPVTMMVFGMMNWTFTWLKP 187

Query: 188 GGELSGRAVAEEFAIRLTEGIAKTATQ 214
            G LS    AE     L  G+    TQ
Sbjct: 188 DGPLSYEGYAEMVIEMLENGLGGGKTQ 214