BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0115.p (245 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3927 [K] COG2207 AraC-type DNA-binding domain-containing prote... 138 1e-32 PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 133 4e-31 RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing prot... 131 1e-30 PA1599 [K] COG2207 AraC-type DNA-binding domain-containing prote... 128 9e-30 PA1235 [K] COG2207 AraC-type DNA-binding domain-containing prote... 128 1e-29 >PA3927 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 128/246 (52%), Gaps = 20/246 (8%) Query: 4 VARSYRKGVRLDPHMHREAQLVYAASGTMQVTTPKGRWLVPPDRAVWVPALLPHAIDVLA 63 ++ + G L H H +AQ +YAA G M++ T G W++PP RAVW+P + H I + Sbjct: 14 ISLDFPDGHHLGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIPPRVEHEIFMSG 73 Query: 64 DIEMRTLYFDQAWLAREKRSDSLDHEFVVRVSPLVHQAIL--------ALFDASCGRERT 115 ++ MRTL+ +Q + L V+ V+PL+ + IL D C R Sbjct: 74 EVHMRTLFIEQP-----ETPTPLSDCCVLAVTPLLREMILRAIHLESQPRLDDFCQR--- 125 Query: 116 ALLIRLVMLELHQAEDSATFIPLPQEPRCRRAADIVLADPTKDHDIDALARTVGTSARTL 175 L L++ E+ E ++P+P++ R + +L P +D VG S+RTL Sbjct: 126 --LQGLILSEIANLERMPLYLPMPRDRRLQAICQALLKQPELGLTLDDWGLRVGASSRTL 183 Query: 176 SRLFSAETQLSFKSWCQRARIAAAIERLSSTANVSVKQVASDLGYASVPAFSHAFRQVTG 235 +RLF+ E Q+SF W Q+ R+ A+ RL A SV+ VA DLGY S AFS FR++ G Sbjct: 184 ARLFAQELQMSFHEWRQQLRLTEALPRL--LAGDSVQVVARDLGYGSTRAFSSMFRRLLG 241 Query: 236 RTPTAF 241 TP + Sbjct: 242 ETPRDY 247 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 120/237 (50%), Gaps = 11/237 (4%) Query: 8 YRKGVRLDPHMHREAQLVYAASGTMQVTTPKGRWLVPPDRAVWVPALLPHAIDVLADIEM 67 Y G L H HR AQL+Y ASG MQV T W+VPP RAVW+P + H + +L + Sbjct: 23 YPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVWIPPGVEHEVRMLG-VST 81 Query: 68 RTLYFDQAWLAREKRSDSLDHEFVVRVSPLVHQAILALFDASCGRE---RTALLIRLVML 124 R+LY + H V+ VSPL+ Q +LA D + R L L++ Sbjct: 82 RSLYIEPG-----SAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTEGRDGALATLLLH 136 Query: 125 ELHQAEDSATFIPLPQEPRCRRAADIVLADPTKDHDIDALARTVGTSARTLSRLFSAETQ 184 EL AE +PLP EPR + L +P + A + TS R+ +R F T Sbjct: 137 ELAAAETLPLHVPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSLRSFNRTFRRYTG 196 Query: 185 LSFKSWCQRARIAAAIERLSSTANVSVKQVASDLGYASVPAFSHAFRQVTGRTPTAF 241 LSF +W QRA + A+ RL+ V+ +A D GY S AFS FR+V G+ P+AF Sbjct: 197 LSFGAWKQRACVVQALARLAGGETVTA--IALDCGYQSPAAFSTMFRRVLGQPPSAF 251 >RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 268 Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 12/247 (4%) Query: 1 VHLVARSYRKGVRLDPHMHREAQLVYAASGTMQVTTPKGRWLVPPDRAVWVPALLPHAID 60 V L R + R H H AQ+ Y+ +G ++V W+VPP RA+W+P + H + Sbjct: 23 VRLYTRQMQANSRFPRHTHAWAQVAYSHTGVLRVQAGDTAWVVPPSRAIWIPPGIEHEVW 82 Query: 61 VLADIEMRTLYFDQAWLAREKRSDSLDHEFVVRVSPLVHQAILAL---FDASCGRERTAL 117 V+ +RTLY D + + + +L V+ VSPL+ + I A+ S RE+ Sbjct: 83 VVEAAFLRTLYVDPSVV-----TGTLAQCRVMEVSPLLRELIAAMDVRRPLSAAREQA-- 135 Query: 118 LIRLVMLELHQAEDSATFIPLPQEPRCRRAADIVLADPTKDHDIDALARTVGTSARTLSR 177 + L++ ELH++ +P+P + R R + V+ADP DALAR VG S RTL+R Sbjct: 136 VATLILDELHRSAPLPLDLPMPTDKRLRALCERVMADPGTPLTFDALAREVGASTRTLAR 195 Query: 178 LFSAETQLSFKSWCQRARIAAAIERLSSTANVSVKQVASDLGYASVPAFSHAFRQVTGRT 237 F E ++F W Q+A +A+AI +S + + ++A LGY S AFS FR+ G++ Sbjct: 196 RFRDELGVNFSQWRQQAVLASAIPLMSQ--GLPLSRIAQALGYNSQSAFSAMFRRAFGQS 253 Query: 238 PTAFAEK 244 P+AF + Sbjct: 254 PSAFLHR 260 >PA1599 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 130/242 (53%), Gaps = 8/242 (3%) Query: 1 VHLVARSYRKGVRLDPHMHREAQLVYAASGTMQVTTPKGRWLVPPDRAVWVPALLPHAID 60 V+L A G R++ H H QL+YAASGT++ +T + +LVP RA+W+P + HA + Sbjct: 20 VYLRAFEMPAGHRVEMHDHPWGQLMYAASGTLRASTERHSYLVPAQRALWIPPGVRHAAE 79 Query: 61 VLADIEMRTLYFDQAWLAREKRSDSLDHEFVVRVSPLVHQAILALFDASCGRERTALLIR 120 + R+LY D++ + L+ ++R L + ER L++ Sbjct: 80 ACNPVLFRSLYLDRSLPGGCR---VLEVSGLLRELLLRAAEFPREYPPGGEAER---LMQ 133 Query: 121 LVMLELHQAEDSATFIPLPQEPRCRRAADIVLADPTKDHDIDALARTVGTSARTLSRLFS 180 +V E+ + ++ +PLP +PR RR D + ADP I A VG S RTL+RLF Sbjct: 134 VVADEVGRLREAPLNLPLPGDPRLRRITDALQADPADPRGISDWAGLVGASRRTLARLFR 193 Query: 181 AETQLSFKSWCQRARIAAAIERLSSTANVSVKQVASDLGYASVPAFSHAFRQVTGRTPTA 240 +TQLSF+ W QR R+ A+ L A SV +VASDLGY S AF F++ G+TP Sbjct: 194 EQTQLSFREWRQRLRLLNAVAALEEGA--SVTRVASDLGYDSTSAFISLFQRHFGQTPGC 251 Query: 241 FA 242 FA Sbjct: 252 FA 253 >PA1235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 12/245 (4%) Query: 1 VHLVARSYRKGVRLDPHMHREAQLVYAASGTMQVTTPKGRWLVPPDRAVWVPALLPHAID 60 V A+ Y G R++ H H AQL++A SG + V T +G W+VPP R VW+PA + HA+ Sbjct: 11 VFAYAQDYLHGERVELHRHSRAQLIHALSGVVTVGTAEGTWVVPPGRGVWLPAGIEHALR 70 Query: 61 VLADIEMRTLYFDQAWLAREKRSDSLDHEFVVRVSPLVHQAILALF----DASCGRERTA 116 + MRTL+ +A + R D VV V PL+ Q I+A D G R Sbjct: 71 FAGQVRMRTLF-----IAPQARHDLPRDCRVVDVPPLLRQLIVAAMRIAPDYPPG-GRDE 124 Query: 117 LLIRLVMLELHQAEDSATFIPLPQEPRCRRAADIVLADPTKDHDIDALARTVGTSARTLS 176 ++ L++ EL A +P P +PR + A+P D + AR +G S RTL+ Sbjct: 125 RVMELILDELRVLPILALHVPQPVDPRLAALCRSLRAEPAADWSLGDAARRLGVSPRTLT 184 Query: 177 RLFSAETQLSFKSWCQRARIAAAIERLSSTANVSVKQVASDLGYASVPAFSHAFRQVTGR 236 R F ET LSF W +R R+ A+++ + A S+ +VA DLGY S AFS FR+ G Sbjct: 185 RAFQRETGLSFVQWLRRMRLLASLD--ALAAGHSILEVALDLGYDSQSAFSAMFRRTLGV 242 Query: 237 TPTAF 241 +P+ + Sbjct: 243 SPSLY 247