BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0113.p         (320 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3926 [GEPR] COG0477 Permeases of the major facilitator superfa...   220   4e-57

>PA3926 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 393

 Score =  220 bits (560), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 133/318 (41%), Positives = 191/318 (60%), Gaps = 2/318 (0%)

Query: 1   MMVIFFVGIGLSMISVGFVQTPLQLGAALLAIGIFASIYHPVGTAMIVSYAEKLGAQMGI 60
           MM++FF GIG + +  G   +   L   L  IG+FA+IYHPVGTAM+V++AE  G ++GI
Sbjct: 73  MMLLFFFGIGAAALLTGLAGSVPMLVTGLTLIGVFAAIYHPVGTAMLVAHAENRGREIGI 132

Query: 61  NGVWGNLGVASSALVTGVIGQYLGWRWAFIVPGTVTVLIGIVFAMTVVHEDRKG-SRQAA 119
           NG+WGNLGVA +AL+TG +  + GWR AFI+PG V +L+GI F   V  E     S +AA
Sbjct: 133 NGMWGNLGVAFAALLTGFLTAHFGWRAAFILPGGVAILLGIGFFFCVREEPSPHLSAKAA 192

Query: 120 AQVRVAKEDMWRVVLSLLIVVIAIS-TTFNAVTVALPKLFAERLADLTRSPALLGVIAAG 178
           A+   ++    R V  +L +V A     FNA TV  PKLF ERL+DL  SP  LGV+ + 
Sbjct: 193 ARGEDSEGLSMRRVFGVLALVTATGGVVFNASTVTYPKLFQERLSDLLASPQTLGVVVSL 252

Query: 179 VYVFGAMTQYTIGKLLDRYSLKTVALPLSFLLAPFLYLAASLSNLPLIVVSIGIVMGAFG 238
            Y FGA+ Q  +G+L+DR +LK   + L+F   P L   A      +++     +   FG
Sbjct: 253 AYAFGAVAQLIMGRLIDRLNLKLPFVFLTFCQVPLLLALAYGHGSAVVLFGALFMFAVFG 312

Query: 239 QVTVNDAMVGKYTTEEWRSRAYAVRYFVGFTAAGASVGLVAWLYDQGGFSMMLRAFAALC 298
           QVTVNDAMV  +   +W++R +A+RYF+ F A+ A++ ++A+L  + G   +    A   
Sbjct: 313 QVTVNDAMVAHFVAPQWQARVFALRYFLSFGASAAAIPMIAYLEPRQGLLGLYLVLAGFA 372

Query: 299 LLAIAAAIILPREIRTPA 316
            L  AAA++ PR  R+ A
Sbjct: 373 ALTFAAALVFPRPARSAA 390