BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0078.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 91 3e-18 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 85 1e-16 BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella me... 85 2e-16 VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae 72 1e-12 AGl2035 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 71 2e-12 >SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 228 Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 100/196 (51%), Gaps = 18/196 (9%) Query: 27 TSFKNKAYEALKEAILKMDIYATPEPVMLDERALSERLGVSRTPIREAIAMLEQDGFVKT 86 T+ + L++ I++ D+ P L E L E+LGVSRTP+REAI L +G V+ Sbjct: 21 TALHDTLVSHLRDMIIEGDL---PPGTRLHEGQLGEQLGVSRTPLREAIKYLASEGLVEL 77 Query: 87 VPRRGIVVVRRTKAEIVDMIRAWAALESMAARLITTTARKKDISALRDFFKDF-----SA 141 VP RG VV R + ++ DM+ LE +A RL TA +I+ +R + + Sbjct: 78 VPSRGAVVKRFSAKDVRDMLTVLQTLEELAGRLACETATDAEIAEVRALHDEMVRRYEAG 137 Query: 142 DRLPQDHVEEYSKANIAFHQALISLSESPVLVDLTNDLLLHVRGYRQLTIGRK--DRTAT 199 DR+ +Y K N H A+ LS + L D+ +L R R IG + ++ A Sbjct: 138 DRM------QYYKLNQDIHSAIARLSGNAALADMHA--MLQTRLKRIRFIGHEGPEKWAA 189 Query: 200 SLPEHLGIIEALEARD 215 ++ EH +I ALEARD Sbjct: 190 AVAEHQEMIAALEARD 205 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 1/172 (0%) Query: 55 LDERALSERLGVSRTPIREAIAMLEQDGFVKTVPRRGIVVVRRTKAEIVDMIRAWAALES 114 LDE L+ R GVSRTPIREA+ L G V+ PRRG VVV + +M A LE Sbjct: 28 LDETQLAMRFGVSRTPIREALMQLSAIGLVEIRPRRGAVVVDPAPQRVYEMFEVMAELEG 87 Query: 115 MAARLITTTARKKDISALRDFFKDFSADRLPQDHVEEYSKANIAFHQALISLSESPVLVD 174 MA L ++D +AL + L ++ + Y N FH+A+ + S S L + Sbjct: 88 MAGALAARRHTEEDSAALLAAHEKCREAVLSEE-TDRYYYENEIFHRAIYTASHSGFLEE 146 Query: 175 LTNDLLLHVRGYRQLTIGRKDRTATSLPEHLGIIEALEARDTELAEKRARDH 226 L +R YR+L + ++R S EH I+EA+ + +T+ A + R H Sbjct: 147 QCTTLHRRLRPYRRLQLRVRNRMKVSFREHGEIVEAILSGNTDGAREGLRSH 198 >BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 238 Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 10/214 (4%) Query: 26 ETSFKNKAYEALKEAILKMDIYATPEPVMLDERALSERLGVSRTPIREAIAMLEQDGFVK 85 +T ++ EAL+E I D YA P ++ E +E G+SRTP+REA+ +LE+DG V Sbjct: 19 QTRLLDEVAEALRERIYAGD-YA-PGAILRQEHIATE-FGISRTPLREALRVLERDGLVI 75 Query: 86 TVPRRGIVVVRRTKAEIVDMIRAWA---ALESMAARLITTTARKKDISALRDFFKDFSAD 142 +P RG VR A++ +I A+A L+ +AAR A DI+ LR Sbjct: 76 HLPGRG---VRVASADLTRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKV 132 Query: 143 RLPQDHVEEYSKANIAFHQALISLSESPVLVDLTNDLLLHVRGYRQLTIGRKDRTATSLP 202 P D + Y+++N+ FH A+++ + + L+ L + + + DR ++ Sbjct: 133 VDPWD-PKAYTQSNVDFHMAVMNTAGNASLIAFVPLLRMTSQVFAPSFSLSVDRARDAIR 191 Query: 203 EHLGIIEALEARDTELAEKRARDHTLGLAAYVEA 236 EH I+EA+ ARD E AE+ AR H A +EA Sbjct: 192 EHAAIVEAIAARDGEEAERLARAHIRATTARLEA 225 >VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae Length = 235 Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 8/177 (4%) Query: 55 LDERALSERLGVSRTPIREAIAMLEQDGFVKTVPRRGIVVVRRTKAEIVDMIRAWAALES 114 + E L+++ VSR P+REA+ +E G ++ +P G V++ + ++V++ ALE Sbjct: 42 ISEPELAKQFQVSRGPLREALMRVEGLGLIERIPHIGARVIQLSPTKLVELYAVREALEG 101 Query: 115 MAARLITTTARKKDISALRDFFKDFSADRLPQDHVEE----YSKANIAFHQALISLSESP 170 MAARL + +++ L S D VE + + + FH +I + Sbjct: 102 MAARLAARNITEIELAGLESLLSTHSTHI---DQVEGASYFHQQGDFDFHYRIIQACRNQ 158 Query: 171 VLVDLTNDLLLH-VRGYRQLTIGRKDRTATSLPEHLGIIEALEARDTELAEKRARDH 226 L+ L D L H +R YR + R +L EH I+ A+ RD ELAE R H Sbjct: 159 QLIGLLCDELYHLLRMYRYQSPRSHSRPVEALEEHKFILRAIRQRDEELAEMLMRRH 215 >AGl2035 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 14/240 (5%) Query: 6 QTKASPTMADTDIAIVRIAPETSFKNKAYEALKEAILKMDIYATPEPVMLDERALSERLG 65 Q K+ T + I R P +++ Y+ ++ AI+ + A PV +E ++ERLG Sbjct: 2 QDKSDLTGFLNGVTITRNMP---LRDQIYQLVRRAIVTGRL-APGSPV--NEIEIAERLG 55 Query: 66 VSRTPIREAIAMLEQDGFVKTVPRRGIVVVRRTKAEIVDMIRAWAALESMAARLITTTAR 125 SRTP+REA+ +E +G + + G V R ++ ++ + ALE + R T Sbjct: 56 TSRTPVREAVKRVEDEGLIDVRAQAGTFVTRISRRQVQEAYIIRIALERESVRHAAETIS 115 Query: 126 KKDISALRDFFKDFSADRLPQDHVEEYSKANIAFHQALISLSESPVLVDLTNDLLLHVRG 185 + LRD D A + + E+ + AFH+ + ++ +L + + + Sbjct: 116 ADGVQRLRDII-DLHALSVKRSRFEDAIDHDDAFHRVIAEVNGYSMLWRVVDITKAQMDR 174 Query: 186 YRQLTIGRKDRTATSLPEHLGIIEALEARDTELAEKRARDH-------TLGLAAYVEAHG 238 R L++ T++ +H I++ALEA D E AE+ ++H TL L +EA G Sbjct: 175 CRLLSLPSPGAGETTIEQHGAIVDALEAHDLEAAERAIKEHLETSLSNTLKLLGSIEASG 234