BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0069.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

jhp0298 [GEPR] COG0477 Permeases of the major facilitator superf...    74   1e-13
HP0313 [GEPR] COG0477 Permeases of the major facilitator superfa...    74   1e-13

>jhp0298 [GEPR] COG0477 Permeases of the major facilitator superfamily jHp
           Helicobacter pylori J99
          Length = 381

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 10/145 (6%)

Query: 3   ISFIWFFGFRFLAGVSGGVIMVLAATAILPHTAPSKRGLVGGVIFAGVGLGVAASGTLVP 62
           I F W + +RF+AGV+   +M+L A   LP+    K+ LVGG+IF+ VG+G   SG ++P
Sbjct: 89  IPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLP 148

Query: 63  LLLQQGVKQAWYGLG---VLSAVLTLISWKAWPAEAPAARNVAEQPVASHGVRSPLVIAL 119
            +    +K AW  LG   +++ +L+L+  K     +   ++V ++  A    + P  + L
Sbjct: 149 WISSYNIKWAWIFLGGSCLIAFILSLVGLK---TRSLRKKSVKKEESA---FKIPFHLWL 202

Query: 120 CL-EYGLNALALVPHMVFLVDFVAR 143
            L    LNA+  +PH +F VD++ R
Sbjct: 203 LLISCALNAIGFLPHTLFWVDYLIR 227


>HP0313 [GEPR] COG0477 Permeases of the major facilitator superfamily Hpy
           Helicobacter pylori 26695
          Length = 381

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 10/145 (6%)

Query: 3   ISFIWFFGFRFLAGVSGGVIMVLAATAILPHTAPSKRGLVGGVIFAGVGLGVAASGTLVP 62
           I F W + +RF+AGV+   +M+L A   LP+    K+ LVGG+IF+ VG+G   SG ++P
Sbjct: 89  IPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLP 148

Query: 63  LLLQQGVKQAWYGLG---VLSAVLTLISWKAWPAEAPAARNVAEQPVASHGVRSPLVIAL 119
            +    +K AW  LG   +++ +L+L+  K     +   ++V ++  A    + P  + L
Sbjct: 149 WISSYNIKWAWIFLGGSCLIAFILSLVGLK---TRSLRKKSVKKEESA---FKIPFHLWL 202

Query: 120 CL-EYGLNALALVPHMVFLVDFVAR 143
            L    LNA+  +PH +F VD++ R
Sbjct: 203 LLISCALNAIGFLPHTLFWVDYLIR 227