BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0066.p (199 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20211 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 253 2e-67 SMb20004 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 140 3e-33 mlr3528 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 136 3e-32 AGpA814 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 119 4e-27 PA3630 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 96 4e-20 >SMb20211 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 310 Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/190 (65%), Positives = 151/190 (79%), Gaps = 1/190 (0%) Query: 4 YPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLG-EVRRVVAASPGYLAQHP 62 YP VSVRL++LDR VNL+DEG+D+ALRI L DS+ I+ +LG +VRRVV ASP YLA HP Sbjct: 118 YPTVSVRLLLLDRFVNLVDEGVDIALRIGQLADSSLISTRLGGDVRRVVVASPRYLANHP 177 Query: 63 LISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASEGH 122 I EPADL KHQI+A T+FGL+SWSF PA S + R +QFTPR +VN+VRAA ASA+ G Sbjct: 178 RIEEPADLDKHQILAFTNFGLESWSFTPAKGSSVPRTIQFTPRCIVNSVRAAAASAAAGR 237 Query: 123 GVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDFATPRLKR 182 G+TRL+SYH+A+ +RDGRL I+L EHPPLP HL+APQGR VPKVRAFVDFA PRL+ Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDFAAPRLRS 297 Query: 183 YFERLSREAS 192 F R++ EA Sbjct: 298 EFARMAAEAG 307 >SMb20004 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 301 Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 5/181 (2%) Query: 4 YPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLGEVRRVVAASPGYLAQHPL 63 YPA+ V+ + +DR NL+DEG+DVA+RIA L S +A ++G VR+V+ SP Y A+ Sbjct: 118 YPAMQVKTIFVDRVTNLVDEGLDVAIRIASLPASGLVARRIGSVRQVLCGSPDYFARFGD 177 Query: 64 ISEPADLAKHQIIAMTH-FGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASEGH 122 P +LA+H+II FG W F + R V +PRL+ NT A +A+A G Sbjct: 178 PGSPQELARHRIIGREGLFGHSEWLF---GRDNNIR-VPISPRLICNTNDAVLAAAVAGW 233 Query: 123 GVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDFATPRLKR 182 G++R SY +A ++ GRL+++L E P+P+H++ +GR +VRAFVDFA R +R Sbjct: 234 GLSRFQSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRIVSARVRAFVDFAAGRFRR 293 Query: 183 Y 183 + Sbjct: 294 H 294 >mlr3528 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 300 Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 113/191 (59%), Gaps = 10/191 (5%) Query: 1 MADYPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLGEVRRVVAASPGYLAQ 60 ++ YP V +RL + DR L+++ D+ALRI L DS+ +AI +G +RRVV ASP YLA+ Sbjct: 115 LSAYPDVDIRLTLADRITQLVEDHFDLALRIGQLPDSSLVAIGVGSIRRVVCASPAYLAE 174 Query: 61 HPLISEPADLAKHQIIAMTHFGLDS---WSFPPAAKSKIARAVQFTPRLVVNTVRAAVAS 117 H ++ P DL H I T GL S WSF + K VQ RL VNT AA+ + Sbjct: 175 HGTLTIPEDLGTHDCI--TFEGLSSAAPWSF---TRGKTDITVQVRSRLQVNTAEAAIDA 229 Query: 118 ASEGHGVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLL-APQGRFDVPKVRAFVDFA 176 A G G+T++ SY + +R G LRI+L + E P PV L+ A G V K+RAF+DFA Sbjct: 230 AIAGVGLTKVLSYQVDAAVRSGMLRIVLQEFEPEPWPVSLVHAGHGLLPV-KLRAFLDFA 288 Query: 177 TPRLKRYFERL 187 PRLK RL Sbjct: 289 APRLKERLARL 299 >AGpA814 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 324 Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 108/183 (59%), Gaps = 10/183 (5%) Query: 3 DYPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLGEVRRVVAASPGYLAQHP 62 ++ + +RL + DR ++L DE +DVALRI HL DS IA ++G VRRVV ASP YLA Sbjct: 143 EHQEIDLRLTLADRQISLADEHVDVALRIGHLADSALIATRVGAVRRVVCASPDYLACRG 202 Query: 63 LISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTP--RLVVNTVRAAVASASE 120 + +P DLA+H I+ F + P + A P R VNT AA+ +A Sbjct: 203 VPLQPDDLARHDGISFQGFA----TAPEVRYRRDVTAFNVEPRARFAVNTTEAAIRAAVS 258 Query: 121 GHGVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFD-VP-KVRAFVDFATP 178 G G+ R+ SY +AD+I+ G L+ +L + PLPV+++ G D +P KVR F+++ TP Sbjct: 259 GIGIIRVLSYQVADQIKSGALQEVLSEFAPEPLPVNVV--HGPVDPMPMKVRRFLNWITP 316 Query: 179 RLK 181 RL+ Sbjct: 317 RLR 319 >PA3630 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 6/175 (3%) Query: 1 MADYPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLGEVRRVVAASPGYLAQ 60 MADYP + V + + +R ++L+ EG D+A+R+ L+DS +A +L + A+P YL + Sbjct: 115 MADYPQLRVDIELSNRQLDLLHEGFDLAIRLGRLSDSRLVATRLAPRVMYLCATPEYLRR 174 Query: 61 HPLISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASE 120 H PA+L + + + D WSF + R VQ R N+ +A + +A Sbjct: 175 HGTPQSPAELGQFNCLIGSS---DLWSFLEDGRETQHR-VQGNWR--CNSGQAVLDAALR 228 Query: 121 GHGVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDF 175 G G+ +L Y++ + +R GRL LL + P V L PQ R PKVR VD+ Sbjct: 229 GFGLCQLPDYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDY 283