BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0045.p         (345 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3124 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   159   1e-38
SMc04055 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...   147   5e-35
AGl567 [K] COG0583 Transcriptional regulator Atu Agrobacterium t...   139   7e-33
mll4082 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...   132   1e-30
PA4174 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   112   1e-24

>PA3124 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 303

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 102/126 (80%), Gaps = 1/126 (0%)

Query: 30  RVVDLGGFTAAANSLRQTPSGVSKLVSRLETRLGTRLVNRTTRKLQLTEEGQAFYQRAQR 89
           RVV+ GGF+AAA     TPS VSKL++RLE RLGTRL+NR+TR+LQLT EG AFY+R  R
Sbjct: 17  RVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCAFYERGVR 76

Query: 90  ILADIDEAEREAA-SCVPRGHLTVNSNIPFGMLHVMPLLPRFMREHPDITLDIVLTDTLV 148
           ILAD++EAER A+ +  PRG L VN+N+PFG   ++PL+P F+ +HP++TLDIVLTD +V
Sbjct: 77  ILADLEEAERCASENAAPRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDIVLTDEVV 136

Query: 149 DLMQER 154
           D++++R
Sbjct: 137 DILEQR 142


>SMc04055 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 318

 Score =  147 bits (370), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 91/126 (72%), Gaps = 1/126 (0%)

Query: 30  RVVDLGGFTAAANSLRQTPSGVSKLVSRLETRLGTRLVNRTTRKLQLTEEGQAFYQRAQR 89
           + V+LGGF+AAA   R TPS VSKLV RLE RLG RLVNR+TRKLQLT EG AFY+R  R
Sbjct: 17  KAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAFYERTVR 76

Query: 90  ILADIDEAEREA-ASCVPRGHLTVNSNIPFGMLHVMPLLPRFMREHPDITLDIVLTDTLV 148
           ILADIDEAER A A   P G + +N N  FG   +MPL+P F    P ++LDIV+TD +V
Sbjct: 77  ILADIDEAERSASAGESPVGRVRLNVNASFGTHVLMPLVPEFRAHFPAVSLDIVMTDAVV 136

Query: 149 DLMQER 154
           DLM+ R
Sbjct: 137 DLMEAR 142


>AGl567 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 301

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 95/126 (75%), Gaps = 1/126 (0%)

Query: 30  RVVDLGGFTAAANSLRQTPSGVSKLVSRLETRLGTRLVNRTTRKLQLTEEGQAFYQRAQR 89
           RVV+LGGF+ AA +   TPS VSKL++RLE+RLG RL+NR+TR+LQ+T EG AFY+RA R
Sbjct: 17  RVVELGGFSRAAAAANMTPSAVSKLIARLESRLGARLLNRSTRQLQITPEGCAFYERATR 76

Query: 90  ILADIDEAEREAASCV-PRGHLTVNSNIPFGMLHVMPLLPRFMREHPDITLDIVLTDTLV 148
           ILAD++EAER A     P G + +N++  +    + P+LPRF+  HP+ITLDIV TD +V
Sbjct: 77  ILADLEEAERAAGERERPIGRVRINTSASYATHILAPILPRFLALHPEITLDIVQTDLVV 136

Query: 149 DLMQER 154
           DL+ ER
Sbjct: 137 DLLAER 142


>mll4082 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 301

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 94/126 (74%), Gaps = 1/126 (0%)

Query: 30  RVVDLGGFTAAANSLRQTPSGVSKLVSRLETRLGTRLVNRTTRKLQLTEEGQAFYQRAQR 89
           RVV+ G F+AAA +LR TPS VSKL++RLE RLG RLV+R+TRKLQLT EG AFY    R
Sbjct: 17  RVVEAGSFSAAARTLRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGTAFYDSGLR 76

Query: 90  ILADI-DEAEREAASCVPRGHLTVNSNIPFGMLHVMPLLPRFMREHPDITLDIVLTDTLV 148
           ILAD+       AA   PRG L VN+ +PFG+  ++PLLPRF+  + +I++D+VLTD+++
Sbjct: 77  ILADMAAAEREAAAGAAPRGRLRVNTYVPFGVHRLIPLLPRFLERYSEISVDLVLTDSVI 136

Query: 149 DLMQER 154
           DLM ER
Sbjct: 137 DLMAER 142


>PA4174 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 307

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 85/126 (67%), Gaps = 2/126 (1%)

Query: 30  RVVDLGGFTAAANSLRQTPSGVSKLVSRLETRLGTRLVNRTTRKLQLTEEGQAFYQRAQR 89
           RVVD G FT AA +L  + + V++LV +LE RL  RL+NRTTRKL LT +G A+Y+R  R
Sbjct: 12  RVVDTGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGAAYYERVVR 71

Query: 90  ILADIDEAER--EAASCVPRGHLTVNSNIPFGMLHVMPLLPRFMREHPDITLDIVLTDTL 147
           +LA++D+AE    +A+  PRG L ++   P   L ++P LP F   +P+I +D+ ++D L
Sbjct: 72  LLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPEIQIDLGVSDRL 131

Query: 148 VDLMQE 153
           VDL+ E
Sbjct: 132 VDLIDE 137