BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0013.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2475 [L] COG0164 Ribonuclease HII Bha Bacillus halodurans           130   1e-30
PA3642 [L] COG0164 Ribonuclease HII Pae Pseudomonas aeruginosa        126   3e-29
SP1156 [L] COG0164 Ribonuclease HII Spn Streptococcus pneumoniae...   124   2e-28
STM0230 [L] COG0164 Ribonuclease HII Sty Salmonella typhimurium LT2   122   6e-28
CC0379 [L] COG0164 Ribonuclease HII Ccr Caulobacter vibrioides        118   9e-27

>BH2475 [L] COG0164 Ribonuclease HII Bha Bacillus halodurans
          Length = 263

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 1/170 (0%)

Query: 27  ILRADTRAGARAILASIDKRRFENRSEGQRLRKMLRFETSLWETGHHAVAGVDEAGMSPL 86
           +L+AD R G ++ L   +++  + ++      +ML +E  LW  G+  VAG+DE G  PL
Sbjct: 28  MLKADERKGVQSALKRYERQLEKEKALWMEHEEMLAYEKDLWAKGYEHVAGLDEVGRGPL 87

Query: 87  AGPVSAGAVILKPGTRIVGIDDSKKLEAAAREELAKEIKEKAESWCVAFVEVEEIDAINI 146
           AGPV   AVIL    ++ G+ DSKKL    RE     IKE A +W VA V V  ID +NI
Sbjct: 88  AGPVVTAAVILPKDVQLPGLTDSKKLAKETRESFYDRIKEVALAWSVAIVPVTVIDEVNI 147

Query: 147 YWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIPQQAIIKGDTKSASIA 196
           Y A  Q M  A+  L + P  LL+DA  L  + +PQQ++IKGD KS SIA
Sbjct: 148 YQATKQGMMSAIDQLSVNPDALLLDAMNLP-LSLPQQSLIKGDQKSLSIA 196


>PA3642 [L] COG0164 Ribonuclease HII Pae Pseudomonas aeruginosa
          Length = 201

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 83/122 (68%)

Query: 75  VAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLEAAAREELAKEIKEKAESWCVA 134
           VAGVDE G  PL GPV   AVIL P   I+G++DSKKL  A RE L +EI+EKA +WC+A
Sbjct: 14  VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73

Query: 135 FVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIPQQAIIKGDTKSAS 194
             EVEEID +NI  A + AMQRAV GL + P+  LID  R  ++ +P   ++KGD++  +
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSVIPRLALIDGNRCPKLAVPCAPVVKGDSQVPA 133

Query: 195 IA 196
           IA
Sbjct: 134 IA 135


>SP1156 [L] COG0164 Ribonuclease HII Spn Streptococcus pneumoniae TIGR4
          Length = 259

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 109/194 (56%), Gaps = 17/194 (8%)

Query: 11  RRYVVEKRPLEASVEQILRADTRAGA--------RAILASIDKRRFENRSEGQRLRKMLR 62
           + ++V  + LE+ +   L  D R+G         RAI A +D        E  RL  ML 
Sbjct: 8   KEFLVTVKELESPIFLELEKDNRSGVQKEISKRKRAIQAELD--------ENLRLESMLS 59

Query: 63  FETSLWETGHHAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLEAAAREELAK 122
           +E  L++ G   +AG+DE G  PLAGPV A AVIL    +I G++DSKK+      E+ +
Sbjct: 60  YEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILSKNCKIKGLNDSKKIPKKKHLEIFQ 119

Query: 123 EIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIPQ 182
            ++++A S  +  ++ + ID +NIY A   AMQ A+  L   P+HLLIDA +L ++ I Q
Sbjct: 120 AVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL-DLPISQ 178

Query: 183 QAIIKGDTKSASIA 196
            +IIKGD  S SIA
Sbjct: 179 TSIIKGDANSLSIA 192


>STM0230 [L] COG0164 Ribonuclease HII Sty Salmonella typhimurium LT2
          Length = 198

 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 79/124 (63%)

Query: 73  HAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLEAAAREELAKEIKEKAESWC 132
           H VAGVDE G  PL G V   AVIL P   IVG++DSKKL    R  L  EIKEKA SW 
Sbjct: 10  HLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWS 69

Query: 133 VAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIPQQAIIKGDTKS 192
           +   E  EID +NI  A + AMQRAV GL + P+++LID  R  E+ +P  A++KGD++ 
Sbjct: 70  LGRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPELPVPSMAVVKGDSRV 129

Query: 193 ASIA 196
           A I+
Sbjct: 130 AEIS 133


>CC0379 [L] COG0164 Ribonuclease HII Ccr Caulobacter vibrioides
          Length = 205

 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 79/127 (62%)

Query: 70  TGHHAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLEAAAREELAKEIKEKAE 129
            G   V GVDEAG  P AGPVSAGAVIL P     G++DSKKL A AR  L +EIK+ A 
Sbjct: 7   CGQAPVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAI 66

Query: 130 SWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIPQQAIIKGD 189
           SWCV    +EEI  +NI  A   AM+RAV GL +TP   L+D     ++  P + +IKGD
Sbjct: 67  SWCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDGNYAFKLPCPVKTVIKGD 126

Query: 190 TKSASIA 196
           + S SIA
Sbjct: 127 SLSCSIA 133