BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0008.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl502_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium ... 150 2e-36 SMb21044_1 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobiu... 146 4e-35 mlr9524 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium loti 146 5e-35 mll4606_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium... 145 8e-35 AGpA74_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium ... 143 2e-34 >AGl502_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 546 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 4/182 (2%) Query: 44 KAPLPGFIEPALATSIEKVPSGERWIHEIKFDGYRVQVHLANETAKIFTRRGHDWTHRFK 103 K LP F+ PALAT K P G RW+HEIKFDGYR+Q + ++ TR G DWT +F Sbjct: 221 KQALPSFVPPALATLKPKPPEGSRWLHEIKFDGYRLQARVDQGKLQLLTRSGLDWTEKFG 280 Query: 104 KVAHDAWRIKASSAV-VDGEIVVPAADGTTDFSVLQNEL-KGKSKSIVLVAFDLLYLNGR 161 A + V +DGEIVV G +DFS LQ +L +G+ V AFDLLYL+G Sbjct: 281 AAVAAALTALPAETVLIDGEIVVERDSGASDFSALQQDLSEGRDDRFVFYAFDLLYLDGS 340 Query: 162 DIRKLPLLQRKAELRKILSGTD--IQFSESFEIDGREMFAHACKLGLEGVVSKVRGSGLS 219 D+R L +RKA L K+L D +++S+ FE G + HAC+L LEGV+SKV+ S Sbjct: 341 DLRGAALSERKALLEKLLPAGDPHLRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYV 400 Query: 220 NG 221 +G Sbjct: 401 SG 402 >SMb21044_1 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobium meliloti Length = 385 Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 117/192 (60%), Gaps = 7/192 (3%) Query: 39 ANIG-VKAPLPGFIEPALATSIEKVPSGERWIHEIKFDGYRVQVHLANETAKIFTRRGHD 97 AN+G ++ P FIEP T ++ P G W+HEIK DGYR Q+H+ ++TR G D Sbjct: 46 ANLGATQSAFPAFIEPCHPTLKKRPPDGADWVHEIKLDGYRAQLHINGGKITLYTRTGLD 105 Query: 98 WTHRFKKVAHDAWRIKASSAVVDGEIVVPAADGTTDFSVLQNEL-KGKSKSIVLVAFDLL 156 WT F+ +A A + V+DGE+ V G DF L+ EL K S ++ AFDLL Sbjct: 106 WTTEFEAIATAAEDLAGHDVVMDGEVTVFGKTGLPDFQALRRELAKRSSPNLTFQAFDLL 165 Query: 157 YLNGRDIRKLPLLQRKAELRKIL---SGTDIQFSESFEI-DGREMFAHACKLGLEGVVSK 212 +L+G D+R++PL++RK LR+++ +GT I + + E+ +G ++ HACK+GLEG+VSK Sbjct: 166 HLDGYDLRRVPLIERKRVLRELIGDAAGT-IAYVDYLELEEGEPVYRHACKMGLEGIVSK 224 Query: 213 VRGSGLSNGTHE 224 + + +G E Sbjct: 225 RKDAPYRSGRQE 236 >mlr9524 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium loti Length = 285 Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 50 FIEPALATSIEKVPSGERWIHEIKFDGYRVQVHLANETAKIFTRRGHDWTHRFKKVAHDA 109 F+ P + T +EK P G+ WIHE+KFDGYR Q+ + + +I+TR GHDWT ++ + +A Sbjct: 5 FVAPLMPTLVEKPPEGDAWIHEVKFDGYRSQLIIDEDGTRIYTRNGHDWTAKYSDLVQEA 64 Query: 110 WRIKASSAVVDGEIVVPAADGTTDFSVLQNELKGKSKSIVLVAFDLLYLNGRDIRKLPLL 169 + A SA++DGEI+V G +DF L+ + + + VAFDLL+LNG D+R + L Sbjct: 65 KSLGAESAIIDGEIIVLNEAGLSDFGELRKAITHRQHDLYFVAFDLLHLNGFDLRDMALK 124 Query: 170 QRKAELRKIL-SGTDIQFSESFEIDGREMFAHACKLGLEGVVSKVRGSGLSNGT 222 R+A L I+ G IQFS++ D + +F K GLEG+VSK + S +G Sbjct: 125 DRRAGLYAIIPPGLRIQFSDALPGDAKAIFELVDKAGLEGMVSKRKDSKYRSGN 178 >mll4606_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium loti Length = 547 Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 6/169 (3%) Query: 50 FIEPALATSIEKVPSGERWIHEIKFDGYRVQVHLANETAKIFTRRGHDWTHRF-KKVAHD 108 FIEP LAT P G+ W+HE+KFDGYR+Q H+A ++ TR G DWT +F ++ + Sbjct: 221 FIEPQLATLERDAPPGKDWLHEVKFDGYRMQAHIAGTDVRLLTRTGLDWTEKFGGEIIAE 280 Query: 109 AWRIKASSAVVDGEIVVPAADGTTDFSVLQNELKGK-SKSIVLVAFDLLYLNGRDIRKLP 167 +K S A++DGEIVV A G + F++LQ +L K + + FDL+ L+G+D+R P Sbjct: 281 LAGLKCSDAIIDGEIVVLADSGVSSFALLQQDLSAKRANRFLYYVFDLMRLDGKDLRAEP 340 Query: 168 LLQRKAELRKILS----GTDIQFSESFEIDGREMFAHACKLGLEGVVSK 212 L++RK L+++L ++FS+ F G+ M HAC++GLEGVVSK Sbjct: 341 LVERKQALQELLGKQAENPAVRFSDHFFEPGKIMLEHACRMGLEGVVSK 389 >AGpA74_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 619 Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 116/196 (59%), Gaps = 8/196 (4%) Query: 35 RQKPA-NIGVKAPLPGFIEPALATSIEKVPSGERWIHEIKFDGYRVQVHLANETAKIFTR 93 ++KPA K+ +P FI P L ++++ PS + WIHEIKFDGYR+Q + N + TR Sbjct: 292 KRKPALKKPAKSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTR 351 Query: 94 RGHDWTHRFKKVAHDAWRIKASSAVVDGEIVVPAADGTTDFSVLQNEL-KGKSKSIVLVA 152 +G DWT ++ +A A + A++DGEI +G DF+ LQ L +GK+ +V A Sbjct: 352 KGLDWTAKYPAIATSAANL--PDAIIDGEICALDENGAPDFAALQAALSEGKTDELVYFA 409 Query: 153 FDLLYLNGRDIRKLPLLQRKAELRKIL--SGTD--IQFSESFEIDGREMFAHACKLGLEG 208 FDLL+ D+R+LPL +RK L+ +L +G D ++F E FE G + ACKL LEG Sbjct: 410 FDLLFEENEDLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEG 469 Query: 209 VVSKVRGSGLSNGTHE 224 +VSK + +G E Sbjct: 470 IVSKQADAPYQSGRTE 485