BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0198.0001.p (391 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpT139 [G] COG1879 ABC-type sugar transport system, periplasmic... 134 3e-31 SMa1427 [G] COG1879 ABC-type sugar transport system, periplasmic... 126 9e-29 BS_rbsB [G] COG1879 ABC-type sugar transport system, periplasmic... 115 2e-25 PM0153 [G] COG1879 ABC-type sugar transport system, periplasmic ... 112 1e-24 HI0504 [G] COG1879 ABC-type sugar transport system, periplasmic ... 111 4e-24 >AGpT139 [G] COG1879 ABC-type sugar transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 435 Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/377 (27%), Positives = 171/377 (45%), Gaps = 15/377 (3%) Query: 27 LSEVSTLENEYFNNWSQGAEQAAKALGLNYRILSGKGDAAKQIEIYEAQFGAGVRITFGE 86 L ++ L NE+ + A++AA LGL Y + + + ++ AG ++ Sbjct: 50 LHQLLLLSNEWNTIINDAAKRAAAVLGLPYSSATFNLNDGTAVTQAQSAAAAGAKLFLIV 109 Query: 87 NLVAANIKPIVEMAKKVGAVHVAVWESLPGFHPLDAGPDNYAFATFFSPDDVE--NSYRI 144 + +++K I A++ G V V ++P P+DAG +A A D N Y Sbjct: 110 SADGSSLKRIARTAQEGGGYVVNVGNNIPWTSPIDAG-TGFAQAIVAREDGNRGGNMYEA 168 Query: 145 AK----LLFDKIGGKGSVAHITGFPGVDADISRTAGFDKALAEYPNIKLVARQPGKWNQV 200 K L K G HITG G D RTA +ALAE+P + + PG W+ Sbjct: 169 VKYTIGLAVKKFGPDAKFLHITGSKGSSYDNLRTAAVKRALAEFPGVTIAGSLPGNWSAE 228 Query: 201 DARKVMEDLLVAHSTIDAVFGQNDSIALGAMQAVE----DAGMHIPIVGLDGNRETLKLV 256 + +K EDL+ H + + QND G + A+ +AG + VG DG + + + Sbjct: 229 EGQKATEDLIARHGVPNGIIAQNDGSLTGVLAALRGLKIEAGEEVLTVGADGATDIFRAI 288 Query: 257 KEGRILATMGFTPQWQAGYALVRAYDVAKGFKPSPCERMMYTGATLITAQNVDKYQA-FL 315 K G++ AT +P + A+ R +D G++ S ER + L+T +VD A ++ Sbjct: 289 KAGKVAATAFQSPAYYGVQAVARLFDALNGYEASAPERFVGFNGLLVTKDDVDGVLARYV 348 Query: 316 AGEKLPFDWRKMSRVLHPNDWDAQNYVWPIDVKTYW---GARTPAGYKFPKAYQDAVDGG 372 LPFD + +S V+ + WD Q + PI Y+ G PA Y+ Y +++ G Sbjct: 349 DNPNLPFDPKLLSHVISGDKWDPQAPLAPIRYDDYFTATGIEKPADYRPQADYAKSIETG 408 Query: 373 CVDQLKAEYNSHHHQRI 389 D + Y S + ++ Sbjct: 409 EFDAVTKRYESAYKLKL 425 >SMa1427 [G] COG1879 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 372 Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 9/239 (3%) Query: 92 NIKPIVEMAKKVGAVHVAVWESLPGFHPLDAGPDNYAFATFFSPDDVENSYRIAKLLFDK 151 N +PIVE G +W HP D G DNY +S D + + A++LF+ Sbjct: 122 NARPIVEAVAAAGGYISTIWNKTDDLHPWDFG-DNYVSHMTWS--DEKPAEETARILFEA 178 Query: 152 IGGKGSVAHITGFPGVDADISRTAGFDKALAEYPNIKLVARQPGKWNQVDARKVMEDLLV 211 +GG+G V H+ G + + R G AL ++PNI+L+ QP W+ +M L Sbjct: 179 MGGEGGVVHLGGIAANNPAVERLNGLKNALKDFPNIELLDAQPADWDTQKGAALMSSFLT 238 Query: 212 AH-STIDAVFGQNDSIALGAMQAVEDAGMH-IPIVGLDGNRETLKLVKEGRILATMGFTP 269 + I V ND+IA G ++A+ G+ +PIV DGN E +++V +G++LAT+ P Sbjct: 239 RYGDRIKGVHCANDNIAYGVIEALRAEGIEGMPIVSYDGNPEAVQMVMDGQLLATVFTNP 298 Query: 270 QWQAGYALVRAYDVAKG-FKPS--PCERMMYTGAT-LITAQNVDKYQAFLAGEKLPFDW 324 W G AY A G FKPS P E + G T L++ ++ ++++A +DW Sbjct: 299 HWGGGITSALAYHAATGSFKPSEEPKEHREFYGPTVLVSKKDAEEFKAKYLDSVPKYDW 357 >BS_rbsB [G] COG1879 ABC-type sugar transport system, periplasmic component Bsu Bacillus subtilis Length = 305 Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 124/259 (47%), Gaps = 12/259 (4%) Query: 30 VSTLENEYFNNWSQGAEQAAKALGLNYRILSGKGDAAKQIEIYEAQFGAGVRITFGENLV 89 VSTL N +F + +G E+ AK G+ I+ + D++KQ E GV Sbjct: 44 VSTLNNPFFVSLKKGIEKEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTD 103 Query: 90 AANIKPIVEMAKKVGAVHVAVWESLPGFHPLDAGPDNYAFATFFSPDDVENSYRIAKLLF 149 ++ I VE A VG V + D + T + D+V+ A + Sbjct: 104 SSAISTAVESANAVGVPVVTI----------DRSAEQGKVETLVASDNVKGGEMAAAFIA 153 Query: 150 DKIGGKGSVAHITGFPGVDADISRTAGFDKALAEYPNIKLVARQPGKWNQVDARKVMEDL 209 DK+G VA + G PG A R +GF +A+ +++V +Q +++ VME+L Sbjct: 154 DKLGKGAKVAELEGVPGASATRERGSGFHN-IADQ-KLQVVTKQSADFDRTKGLTVMENL 211 Query: 210 LVAHSTIDAVFGQNDSIALGAMQAVEDAGMHIPIVGLDGNRETLKLVKEGRILATMGFTP 269 L H I AVF ND +ALGA++A+ +G I ++G DGN++ L +K+ ++ AT+ P Sbjct: 212 LQGHPDIQAVFAHNDEMALGALEAINSSGKDILVIGFDGNKDALASIKDRKLSATVAQQP 271 Query: 270 QWQAGYALVRAYDVAKGFK 288 + A A D+ G K Sbjct: 272 ELIGKLATEAADDILHGKK 290 >PM0153 [G] COG1879 ABC-type sugar transport system, periplasmic component Pmu Pasteurella multocida Length = 295 Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 138/289 (47%), Gaps = 12/289 (4%) Query: 1 MRRISTYLFATVAFLGAAGNAIAEDVLS-EVSTLENEYFNNWSQGAEQAAKALGLNYRIL 59 +++++T A + L +G A+A++ ++ VSTL+N +F GA++ A LG +L Sbjct: 4 LQKLTTLASALMLSLAVSGTALAKETIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVL 63 Query: 60 SGKGDAAKQIEIYEAQFGAGVRITFGENLVAANIKPIVEMAKKVGAVHVAVWESLPGFHP 119 + D AK++ E GV++ I P + V AV +A +P Sbjct: 64 DSQNDPAKELANVEDLTVRGVKVLL--------INP-TDSEAVVNAVKMANRNKIP-VIT 113 Query: 120 LDAGPDNYAFATFFSPDDVENSYRIAKLLFDKIGGKGSVAHITGFPGVDADISRTAGFDK 179 LD G + + D+V + +K+G V + G G A R GF + Sbjct: 114 LDRGAVAGDVVSHIASDNVAGGKMAGDFIAEKLGAGAKVIQLEGIAGTSAARERGEGFKQ 173 Query: 180 ALAEYPNIKLVARQPGKWNQVDARKVMEDLLVAHSTIDAVFGQNDSIALGAMQAVEDAGM 239 A+ + ++A QP +++ VME+LL + + AVF QND +ALGA++A+ A Sbjct: 174 AIDAH-KFDVLASQPADFDRTKGLNVMENLLASKGDVKAVFAQNDEMALGALRAINAANK 232 Query: 240 HIPIVGLDGNRETLKLVKEGRILATMGFTPQWQAGYALVRAYDVAKGFK 288 + +VG DG + +K V+ G++ AT+ P +V A V KG K Sbjct: 233 KVLVVGFDGTDDGVKAVQTGKMAATIAQQPDLIGALGVVTADKVLKGEK 281 >HI0504 [G] COG1879 ABC-type sugar transport system, periplasmic component Hin Haemophilus influenzae Length = 292 Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 137/290 (47%), Gaps = 14/290 (4%) Query: 1 MRRISTYLFATVAFLGAAGNAIAEDVLS-EVSTLENEYFNNWSQGAEQAAKALGLNYRIL 59 M++++ A + L + +A A+D ++ VSTL+N +F GA++ A LG +L Sbjct: 1 MKKLTALTSAVLLGLAVSSSASAQDTIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVL 60 Query: 60 SGKGDAAKQIEIYEAQFGAGVRITFGENLVAANIKPIVEMAKKVG-AVHVAVWESLPGFH 118 + D AK++ E G +I I P A VG AV +A + +P Sbjct: 61 DSQNDPAKELANIEDLTVRGAKILL--------INPTASEA--VGNAVAIANRKHIP-VI 109 Query: 119 PLDAGPDNYAFATFFSPDDVENSYRIAKLLFDKIGGKGSVAHITGFPGVDADISRTAGFD 178 LD G + + D++ + K+G V + G G A R GF Sbjct: 110 TLDRGAAKGNVVSHIASDNIAGGKMAGDFIAQKLGDNAKVIQLEGIAGTSAARERGEGFK 169 Query: 179 KALAEYPNIKLVARQPGKWNQVDARKVMEDLLVAHSTIDAVFGQNDSIALGAMQAVEDAG 238 +A+ + ++A QP +++ V E+LL + + A+F QND +ALGA++AV+ A Sbjct: 170 QAIDAH-KFNVLASQPADFDRTKGLNVTENLLASKGDVQAIFAQNDEMALGALRAVKAAN 228 Query: 239 MHIPIVGLDGNRETLKLVKEGRILATMGFTPQWQAGYALVRAYDVAKGFK 288 + IVG DG + +K VK G++ AT+ P+ +V A + KG K Sbjct: 229 KKVLIVGFDGTDDGVKAVKSGKMAATIAQQPELIGSLGVVTADKILKGEK 278