BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0020.p         (215 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3973 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    82   1e-15

>PA3973 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 215

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%)

Query: 1   VKRLAARRSAILSAARDAAAAGGMAAVQIAPVAVRANVAAGTVYRYFPSKAELISELITE 60
           ++R +A R  IL         GG AA+ +  +A  A +A G++YR+F  K EL +E+   
Sbjct: 10  LQRDSALRERILQLGLRRVVEGGFAALTMQALADDAGIATGSLYRHFRGKGELAAEIFRR 69

Query: 61  VSRDELTAIRRAADAAPGPSSALAAAVTTIAVHVLSQRKLAWGILAEPVDVDVTASRLAS 120
            S+ E+ A+         P+  LA  +   A    S ++LA+ ++AEPVD +V   RL  
Sbjct: 70  ASQREVDALAVVLRGPGAPAWRLAEGLRRFAARAWSSQRLAFALIAEPVDPEVDEQRLRY 129

Query: 121 RRDISGELAMRIDAAVRAGHLPAQDTALAATALLGALHEALVGPLAP 167
           R   +      ++   R+G        LAA  L+GA+ EALVGPL+P
Sbjct: 130 REAYAALFVELLEEGRRSGAFQLSLVPLAAACLVGAIAEALVGPLSP 176