BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0010.p (496 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll3001 [T] COG2204 Response regulator containing CheY-like rece... 550 e-156 CC3315 [T] COG2204 Response regulator containing CheY-like recei... 511 e-144 AGl2141 [T] COG2204 Response regulator containing CheY-like rece... 499 e-141 SMc04011 [T] COG2204 Response regulator containing CheY-like rec... 491 e-138 TP0519 [T] COG2204 Response regulator containing CheY-like recei... 345 1e-94 >mll3001 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Mlo Mesorhizobium loti Length = 511 Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust. Identities = 292/498 (58%), Positives = 356/498 (71%), Gaps = 15/498 (3%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M +ILI DDD VQRRL+E V + G+ +VVD G+A + AL + I V+LDLVMP Sbjct: 1 MTGSILIVDDDPVQRRLLEAAVTRFGHTAIVVDGGEAGLDALDGPGARDICVVILDLVMP 60 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 GLDG+GVL +RE +TVPVIVQTA GGI+ VV AMR GA DFVVKP +RLQ S+ NA Sbjct: 61 GLDGIGVLKAMRERDITVPVIVQTAQGGIETVVLAMRHGAFDFVVKPASPDRLQASIANA 120 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 L A++GE++R R G LTF D+IT S AM V+R QKAA S+IP+LIEGESGVGK Sbjct: 121 LKVEAVEGEVKRTSRKRGGLLTFRDMITHSPAMDRVIRLGQKAAGSSIPILIEGESGVGK 180 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 EL ARAI GSG+R+++PFV VNCGAIPDNLVESILFGHEKG+FTGAT++H GKFVEAH G Sbjct: 181 ELVARAIQGSGDRRSKPFVTVNCGAIPDNLVESILFGHEKGSFTGATDKHTGKFVEAHSG 240 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDE+G+LPL QVKLLRA+QEG V+ VGGR VKVD+R+ISAT+R LL VK G+FR Sbjct: 241 TLFLDEIGDLPLDVQVKLLRAVQEGEVDPVGGRSTVKVDIRLISATHRNLLQQVKDGKFR 300 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFC-AEENRNITGISGEAMAHLSQLDW 359 EDLFYRL+V P+ +P LR RR+DIPHL+ HF+ + A+ R + GIS A+A L DW Sbjct: 301 EDLFYRLNVYPIFVPPLRDRRDDIPHLVTHFMEKVAPADPRRRLQGISPAALAVLEAYDW 360 Query: 360 PGNIRQLENTVYRAVVMSDGDQLALADFPQGTAHPVAEGK-SLQGEPLVVSPSTAPAM-- 416 PGNIRQLEN V+RA V+ +GD L + DFPQ A EG +L+ + S+ P + Sbjct: 361 PGNIRQLENAVFRASVLCEGDVLDVDDFPQIRAQ--VEGTVNLETDDAAPRLSSPPELRD 418 Query: 417 ---ISGNEIPV------TVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSE 467 +G++ P V P G L L+ G VR L D+E E+I+ AI HY GQMSE Sbjct: 419 EGGPAGDDAPAAEPDRPAVLQPRFGTLRALDERGNVRALADVELEMIKLAIDHYNGQMSE 478 Query: 468 VARRLKIGRSTLYRKLDE 485 VARRL IGRSTLYRKL E Sbjct: 479 VARRLGIGRSTLYRKLKE 496 >CC3315 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Ccr Caulobacter vibrioides Length = 488 Score = 511 bits (1316), Expect = e-144, Method: Compositional matrix adjust. Identities = 264/487 (54%), Positives = 337/487 (69%), Gaps = 12/487 (2%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M T+L+ DDD QRRL++ ++++ G+ + GDAAIA LT+ D ++LDLVMP Sbjct: 1 MTKTVLVVDDDPTQRRLIQAVLERDGFAVSHAEGGDAAIAHLTSGAPA--DVILLDLVMP 58 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 GL+G L ++R G PVIV TA GG+D VV AM+AGA DF +KP ER+ VS+RNA Sbjct: 59 GLNGQDALKEMRARGFNQPVIVLTASGGVDTVVKAMQAGACDFFIKPASPERITVSIRNA 118 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 L+ LKGE++R+ G+ TF+D+I S M V R ++AA S IPVLI GESGVGK Sbjct: 119 LSMGDLKGEVERLTKRAGGKTTFADLIGASPVMTMVKRMGERAAKSGIPVLITGESGVGK 178 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 EL ARA+HGS +R +PFVAVNCGAIP+NLVESILFGHEKG+FTGAT++H GKF EA GG Sbjct: 179 ELIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFKEADGG 238 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDEVGELPL QVKLLRALQEG ++ +G ++ +KVDVRI+SATNR L V GG+FR Sbjct: 239 TLFLDEVGELPLDMQVKLLRALQEGEIDPIGSKRSIKVDVRIVSATNRDLQQAVSGGRFR 298 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEENRNITGISGEAMAHLSQLDWP 360 EDLFYRL+V P+ P+LR+RREDIP L+ F+ RF EE + + G S E M L+ DWP Sbjct: 299 EDLFYRLNVFPIEAPSLRERREDIPALVEAFIRRFNVEEGKRVIGASPETMQLLTSFDWP 358 Query: 361 GNIRQLENTVYRAVVMSDGDQLALADFP--QGTAHPVAEGKSLQGEPLVVSPSTAPAMIS 418 GN+RQLENTVYRA+V++D L DFP G A P+ E + +SPS PA + Sbjct: 359 GNVRQLENTVYRAIVLADAPYLQPFDFPAISGLAAPI--------EAVSISPSPPPAALL 410 Query: 419 GNEIPVTVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSEVARRLKIGRST 478 + + +L+ G +R LE++E ++I+ AI Y G MSEVARRL IGRST Sbjct: 411 QATHAAMAAAVAEAPVRILDDRGHLRTLEEIERDLIQHAIDVYAGHMSEVARRLGIGRST 470 Query: 479 LYRKLDE 485 LYRK+ E Sbjct: 471 LYRKVRE 477 >AGl2141 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 513 Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust. Identities = 259/501 (51%), Positives = 344/501 (68%), Gaps = 17/501 (3%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M A +L+ DDD VQRRL++N V++ G+ L+ ++G A + L + I+ +VLDL+MP Sbjct: 1 MTAHVLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGE-INVIVLDLMMP 59 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 +DGL L + E G VPVIVQT GGID VV AMRAGA DFVVKPV ER+ ++ NA Sbjct: 60 EMDGLAFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNA 119 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 L + + + R R + F+DI++ S AM V+ AQ+AA S+IPV++EGESGVGK Sbjct: 120 LKLDRKEAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGK 179 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 E+ ARAI G+R +PF+ VNCGAIP NLVESILFGHEKGAFTGATE+H GKF+EA GG Sbjct: 180 EMVARAIQSGGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGG 239 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDE+G+LPL QVKLLRA+Q+G +E VG + KV+VR+ISATN+ L++ VK G+FR Sbjct: 240 TLFLDEIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFR 299 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEEN-RNITGISGEAMAHLSQLDW 359 EDL+YRL+V P+TIPALR+R+EDIPHL R F RF AE+ N G+ A+A L+ DW Sbjct: 300 EDLYYRLNVFPITIPALRRRKEDIPHLARVFAERFSAEQKLPNPVGLDASALALLTAYDW 359 Query: 360 PGNIRQLENTVYRAVVMSDGDQLALADFPQGTAHPVAEGKSLQGEPLVVSPSTAPAMISG 419 PGNIRQLEN V+RAVV+S G +L+ +DFPQ G+ ++ SPS + ++ Sbjct: 360 PGNIRQLENAVFRAVVLSQGSELSDSDFPQIALQLPEFSNGDDGDDIIRSPSGSSLKLAA 419 Query: 420 NEIP--------------VTVSLPTAGGL-AMLNAAGEVRPLEDLENEIIRFAISHYRGQ 464 P ++ ++ G L + + +G +R L ++E E+IRFA+ YRGQ Sbjct: 420 YSPPPAAESHAVIEEPSDISTTIYRGGNLISSTDDSGNIRKLAEIEEELIRFALRFYRGQ 479 Query: 465 MSEVARRLKIGRSTLYRKLDE 485 MS+VAR+L IGRSTLYRKL + Sbjct: 480 MSQVARKLGIGRSTLYRKLKD 500 >SMc04011 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Sme Sinorhizobium meliloti Length = 513 Score = 491 bits (1265), Expect = e-138, Method: Compositional matrix adjust. Identities = 265/505 (52%), Positives = 353/505 (69%), Gaps = 25/505 (4%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M + IL+ DDD VQRRL+ NM+++ G+ + D+G + + L + I+ ++LDL+MP Sbjct: 1 MTSHILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLE-LLQRKGGIINVILLDLLMP 59 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 ++G G+L + E G+ +PVIVQT GGI+ VV AM+AGA DF+VKPV ERL ++L NA Sbjct: 60 EMNGHGLLEALAERGIDIPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNA 119 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 L ++ G+++ R R G + F DI++ S AM V+ A++AA S IP+++EGESGVGK Sbjct: 120 LKMASRDGKVKTARRPRGGAVGFDDIVSASPAMIRVIDLARRAAQSNIPIVLEGESGVGK 179 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 E+ ARAI + +R A+PFV VNCGAIP NLVESILFGHEKGAFTGA+E+H GKFV+A GG Sbjct: 180 EMVARAIQAASDRAAKPFVTVNCGAIPHNLVESILFGHEKGAFTGASEKHSGKFVDADGG 239 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDE+G+LPL QVKLLRA+Q+G +E +G R+P KV+VR+ISATN+ L+ V+ G+FR Sbjct: 240 TLFLDEIGDLPLDVQVKLLRAVQQGEIETIGARQPQKVNVRLISATNKDLITEVREGRFR 299 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEE--NRNITGISGEAMAHLSQLD 358 EDL+YRL+V P+TIPALR+R+EDIP L+R F+ RF AE+ ++ +T SG AMA L+ D Sbjct: 300 EDLYYRLNVFPITIPALRRRKEDIPVLVRAFVERFSAEQRLDQRLTVSSG-AMALLTSYD 358 Query: 359 WPGNIRQLENTVYRAVVMSDGDQLALADFPQ-GTAHP---VAEGKSLQ-GEPLVVSPSTA 413 WPGNIRQLEN ++RAVV++DG +L + DFPQ T P VA+ L GE P Sbjct: 359 WPGNIRQLENAIFRAVVLADGHELTVRDFPQVATQIPGYIVADRSGLSWGE---AGPERR 415 Query: 414 PA---------MISGNEIPVTVSLPTAGGL----AMLNAAGEVRPLEDLENEIIRFAISH 460 PA E P G L A L+ GEVR L ++E E+IRFA+ Sbjct: 416 PASGQLAAAQADAGAREQPAHSEQTPEGRLENAIASLSEGGEVRKLAEVEEELIRFALKF 475 Query: 461 YRGQMSEVARRLKIGRSTLYRKLDE 485 YRGQMS+VAR+L IGRSTLYRKL + Sbjct: 476 YRGQMSQVARKLGIGRSTLYRKLKD 500 >TP0519 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tpa Treponema pallidum Length = 458 Score = 345 bits (886), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 195/495 (39%), Positives = 274/495 (55%), Gaps = 41/495 (8%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M +IL+ DD+ R ++ ++ GYE + G+ + + ID ++ DL MP Sbjct: 1 MKFSILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGD---IDLIITDLKMP 57 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 + G VL + +P+I+ T HG ++N V AM GA DF+ KP+ RL + +R A Sbjct: 58 RMSGELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRA 117 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 L L + + + R +F +I+ S AM V +KAA+S VLI GESGVGK Sbjct: 118 LQNRELIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGK 177 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 EL A AIH RKA+P + V+C + + ++ES LFGHE+GAFTGA R +G+F AH G Sbjct: 178 ELIANAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEG 237 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 ++FLDE+GE+ +A Q+KLLR LQE + E VGGR+ +KVDVR+ISATNR LL+ +K FR Sbjct: 238 SMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFR 297 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEENRNITGISGEAMAHLSQLDWP 360 EDL+YRL+V+ + +PALR+R+ED+P L+ FL E + IT I +A + L DWP Sbjct: 298 EDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWP 357 Query: 361 GNIRQLENTVYRAVVMSDGDQLALADFPQGTAHPVAEGKSLQGEPLVVSPSTAPAMISGN 420 GNIRQL N + AV+MS G + + D + P + S Sbjct: 358 GNIRQLRNCIESAVIMSSGPVIHIEDLSE--------------------PIRSLGETSSI 397 Query: 421 EIPVTVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSEVARRLKIGRSTLY 480 IP+ VS +ED E EII + +G S+ A L IGR TLY Sbjct: 398 RIPIGVS------------------MEDAEKEIILQTLEAQKGNKSKTADVLGIGRKTLY 439 Query: 481 RKLDEAAAGARASDA 495 KLD+ + DA Sbjct: 440 LKLDQYTNTSFEPDA 454