BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0088.p (202 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr8407 [H] COG0307 Riboflavin synthase alpha chain Mlo Mesorhiz... 211 1e-54 BMEI1188 [H] COG0307 Riboflavin synthase alpha chain Bme Brucell... 208 6e-54 SMc01773 [H] COG0307 Riboflavin synthase alpha chain Sme Sinorhi... 199 3e-51 AGc2161 [H] COG0307 Riboflavin synthase alpha chain Atu Agrobact... 197 1e-50 PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomon... 157 2e-38 >mlr8407 [H] COG0307 Riboflavin synthase alpha chain Mlo Mesorhizobium loti Length = 205 Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 112/201 (55%), Positives = 138/201 (68%), Gaps = 3/201 (1%) Query: 1 VFTGIVTDVGEITSLKQVAQGQLHRMRIACDYDQTTIADGASIACNGVCLTVVA-SGTAD 59 +FTGIVTD+G + +++ +++G +RI YD TIA GASI+C GVCLTV A Sbjct: 1 MFTGIVTDIGTVAAVRPLSEGV--GLRIDTAYDPETIAIGASISCGGVCLTVTALPEHGS 58 Query: 60 GKTWFDVDAAAETLGMTTAKHWGQGGRLNLERALKIGDELGGHIVAGHADGIATIVKRED 119 WF+V+A E L +TTA W G ++NLERALKIGDELGGHIV+GH DG A +V+R+D Sbjct: 59 NARWFEVEAWEEALRLTTASSWKSGSKVNLERALKIGDELGGHIVSGHVDGTAELVERKD 118 Query: 120 LPDMARFELRTSRELARFIAAKGSVTLDGVSLTVNTVDDVGFSVLIIPHTLAVTTLSGWK 179 D RF L R LA+FIA KGSV LDG SLTVN V+ F VL+I H+L VTT K Sbjct: 119 EGDAVRFTLEAPRHLAKFIAPKGSVALDGTSLTVNKVEGTRFDVLLIHHSLTVTTWGERK 178 Query: 180 AGSEVNIEVDLMARYAARLSE 200 G VNIE+D MARYAARL+E Sbjct: 179 VGDRVNIEIDTMARYAARLAE 199 >BMEI1188 [H] COG0307 Riboflavin synthase alpha chain Bme Brucella melitensis Length = 203 Score = 208 bits (530), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 110/203 (54%), Positives = 140/203 (68%), Gaps = 3/203 (1%) Query: 1 VFTGIVTDVGEITSLKQVAQGQLHRMRIACDYDQTTIADGASIACNGVCLTVVA-SGTAD 59 +FTGI+TD+G++ +K + +G L +RI YD TI GASIAC+GVCLTVVA Sbjct: 2 MFTGIITDIGKVDRVKPLNEGVL--LRIETAYDPETIELGASIACSGVCLTVVALPEKGS 59 Query: 60 GKTWFDVDAAAETLGMTTAKHWGQGGRLNLERALKIGDELGGHIVAGHADGIATIVKRED 119 WF+V+A E L +TT W G ++NLER+LK+GDE+GGH+V GH DG A IV+R+D Sbjct: 60 NARWFEVEAWEEALRLTTISSWQSGRKINLERSLKLGDEMGGHLVFGHVDGQAEIVERKD 119 Query: 120 LPDMARFELRTSRELARFIAAKGSVTLDGVSLTVNTVDDVGFSVLIIPHTLAVTTLSGWK 179 D RF LR ELA FIA KGSV LDG SLTVN V+ F VL+I H+L VTT K Sbjct: 120 EGDAVRFTLRAPEELAPFIAQKGSVALDGTSLTVNGVNANEFDVLLIRHSLEVTTWGERK 179 Query: 180 AGSEVNIEVDLMARYAARLSEMK 202 AG +VNIE+D +ARYAARL++ + Sbjct: 180 AGDKVNIEIDQLARYAARLAQYQ 202 >SMc01773 [H] COG0307 Riboflavin synthase alpha chain Sme Sinorhizobium meliloti Length = 206 Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 107/203 (52%), Positives = 136/203 (66%), Gaps = 3/203 (1%) Query: 1 VFTGIVTDVGEITSLKQVAQGQLHRMRIACDYDQTTIADGASIACNGVCLTVVASGTA-D 59 +FTGI+TD+G + + + +G ++R+A +YD TI GAS+A G+CLTV + A Sbjct: 1 MFTGIITDIGTVEKVTPLEEGI--KLRVATNYDPQTIDLGASVAHAGICLTVTSLPEAGS 58 Query: 60 GKTWFDVDAAAETLGMTTAKHWGQGGRLNLERALKIGDELGGHIVAGHADGIATIVKRED 119 + WF+V+A E L +TT W +G R+NLER+LKIGDELGGHIV+GH DG A I+ E Sbjct: 59 NERWFEVEAWEEALRLTTIADWREGTRINLERSLKIGDELGGHIVSGHVDGKAEILAVEA 118 Query: 120 LPDMARFELRTSRELARFIAAKGSVTLDGVSLTVNTVDDVGFSVLIIPHTLAVTTLSGWK 179 + RF LR LA+FIA KGSV LDG SLTVN VD V F VL+I H+L VTT K Sbjct: 119 EGEAVRFRLRAPEHLAKFIAPKGSVALDGTSLTVNKVDGVEFDVLLIRHSLEVTTWGERK 178 Query: 180 AGSEVNIEVDLMARYAARLSEMK 202 +G VN EVD MARYAARL+E Sbjct: 179 SGDLVNFEVDTMARYAARLAEFP 201 >AGc2161 [H] COG0307 Riboflavin synthase alpha chain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 204 Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 108/203 (53%), Positives = 133/203 (65%), Gaps = 3/203 (1%) Query: 1 VFTGIVTDVGEITSLKQVAQGQLHRMRIACDYDQTTIADGASIACNGVCLTVVA-SGTAD 59 +FTGIVTDVG ++ L+ + +G R+R+A +YD TI GASI+ GVCLTV Sbjct: 2 MFTGIVTDVGTVSELEALPEGV--RLRVATNYDPKTIDMGASISHGGVCLTVTKLPDDGS 59 Query: 60 GKTWFDVDAAAETLGMTTAKHWGQGGRLNLERALKIGDELGGHIVAGHADGIATIVKRED 119 + W++V+A E L +TT W QG +NLERALKIGDELGGHIV+GH DG A I+ E Sbjct: 60 NERWYEVEAWEEALRLTTIAGWRQGTHVNLERALKIGDELGGHIVSGHVDGRAEILSVEP 119 Query: 120 LPDMARFELRTSRELARFIAAKGSVTLDGVSLTVNTVDDVGFSVLIIPHTLAVTTLSGWK 179 + R LR LA+F+A KGSV LDG SLTVN V+ F VL+I HTLAVTT + Sbjct: 120 EGEAVRIRLRAPEHLAKFVAPKGSVALDGTSLTVNAVEGTDFDVLLIRHTLAVTTWGERQ 179 Query: 180 AGSEVNIEVDLMARYAARLSEMK 202 G VN EVD MARYAARL+E Sbjct: 180 PGDFVNFEVDTMARYAARLAEFP 202 >PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomonas aeruginosa Length = 219 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 123/199 (61%), Gaps = 7/199 (3%) Query: 1 VFTGIVTDVGEITSLKQVAQGQLHRMRIAC-DYDQTTIADGASIACNGVCLTVVASGTAD 59 +FTGI+ +G + ++ +G R+ IA D + G SIA NGVCLT V D Sbjct: 1 MFTGIIESIGSVRAM--TPKGGDLRVYIATGKLDLGDVKLGDSIAVNGVCLTAVEL-PGD 57 Query: 60 GKTWFDVDAAAETLGMTTAKHWGQGGRLNLERALKIGDELGGHIVAGHADGIATIVKRED 119 G F D + E+L T +H G R+NLE+AL LGGH+V+GH DG+ ++KRE+ Sbjct: 58 G---FWADVSRESLARTAFQHLKVGSRVNLEKALTPTTRLGGHLVSGHVDGVGEVLKREE 114 Query: 120 LPDMARFELRTSRELARFIAAKGSVTLDGVSLTVNTVDDVGFSVLIIPHTLAVTTLSGWK 179 +F +R RELAR+IA KGS+T+DG SLTVN V+ F + I+PHTL+ T ++ ++ Sbjct: 115 NARAIQFTVRAPRELARYIAHKGSITVDGTSLTVNAVNGAEFELTIVPHTLSETIMAEYQ 174 Query: 180 AGSEVNIEVDLMARYAARL 198 G VN+EVDL+ARY RL Sbjct: 175 PGRRVNLEVDLLARYLERL 193