BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0086.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc2167 [K] COG0781 Transcription termination factor Atu Agrobac...   191   4e-49
SMc01778 [K] COG0781 Transcription termination factor Sme Sinorh...   189   2e-48
BMEI1186 [K] COG0781 Transcription termination factor Bme Brucel...   181   8e-46
mlr8411 [K] COG0781 Transcription termination factor Mlo Mesorhi...   177   6e-45
CC1360 [K] COG0781 Transcription termination factor Ccr Caulobac...   144   1e-34

>AGc2167 [K] COG0781 Transcription termination factor Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 169

 Score =  191 bits (486), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 123/154 (79%)

Query: 6   KPAKAPDRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPAEA 65
           +P +   + AN+RGAARLAAVQALYQMD+GG G+ ++ AE+E+H LG EV+G+ YL A+ 
Sbjct: 13  EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADP 72

Query: 66  AFFRDVVSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGRVV 125
           ++FR +VSGVVRDQ ++DPL+  AL + WPL R+DA +RA+LRAG++E+  RKDVP  V+
Sbjct: 73  SWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPVAVI 132

Query: 126 VSEYVDVAHAFVEKDETGMVNAVLDQIARQFRGD 159
           V+EYV++A AF E DE  +VNAVLD+IA+Q RG+
Sbjct: 133 VTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGE 166


>SMc01778 [K] COG0781 Transcription termination factor Sme Sinorhizobium
           meliloti
          Length = 160

 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 122/157 (77%)

Query: 4   NKKPAKAPDRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPA 63
              P+  P ++ N+RGAARLAAVQALYQMD+GG G+ +I AE+E H LG E++G+ YL A
Sbjct: 2   TNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGDTYLRA 61

Query: 64  EAAFFRDVVSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGR 123
           +A++FR +V+GVVRDQ +LDPLI  AL   W L R+D+ +RA+LRAG++E+  RKDVP  
Sbjct: 62  DASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKDVPVP 121

Query: 124 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFRGDE 160
           V+V+EYV++A AF + +E  +VNAVLD+IA+Q RGD+
Sbjct: 122 VIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQVRGDQ 158


>BMEI1186 [K] COG0781 Transcription termination factor Bme Brucella
           melitensis
          Length = 171

 Score =  181 bits (458), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 118/154 (76%)

Query: 6   KPAKAPDRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPAEA 65
           +P     R AN+RG ARLAAVQAL+QMD+ G G+ ++ AE+E+  LG EV+G +YL A+ 
Sbjct: 8   RPTPNLQRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADP 67

Query: 66  AFFRDVVSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGRVV 125
            +FR +V+GVV DQ +LDP+I +AL++ WPL R+D+ LRA+LRAG++EL+ RKDVP  V+
Sbjct: 68  QWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVI 127

Query: 126 VSEYVDVAHAFVEKDETGMVNAVLDQIARQFRGD 159
           VSEYVD+A AF  +DE  +VNAVLD++A   RG+
Sbjct: 128 VSEYVDIAKAFYTEDEPKLVNAVLDRLALVIRGE 161


>mlr8411 [K] COG0781 Transcription termination factor Mlo Mesorhizobium loti
          Length = 155

 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/147 (58%), Positives = 116/147 (78%)

Query: 13  RKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPAEAAFFRDVV 72
           R AN+RGAARLAAVQALYQMD+ G+G+ +I AE+E+  LG EV+G  Y  A+A +FR ++
Sbjct: 2   RHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAIL 61

Query: 73  SGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGRVVVSEYVDV 132
           +GVV DQ  +DP+I +AL+  WPL R+D+ LRA+LRAG YEL  R+DVP  V+VSEYVD+
Sbjct: 62  TGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVDI 121

Query: 133 AHAFVEKDETGMVNAVLDQIARQFRGD 159
           A AF E+DE  +VNAVLD+++R+ RG+
Sbjct: 122 AKAFYEEDEPKLVNAVLDRVSRRVRGE 148


>CC1360 [K] COG0781 Transcription termination factor Ccr Caulobacter
           vibrioides
          Length = 149

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 97/140 (69%)

Query: 18  RGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPAEAAFFRDVVSGVVR 77
           R  ARLAAVQALYQM++ GAG++ +  EF  H    +VEGE+   A+  FF D+  GVV 
Sbjct: 9   RSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLARGVVT 68

Query: 78  DQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGRVVVSEYVDVAHAFV 137
           +QA++D  I + L+ GW L+R+DA  RAVLRAG++EL +R DVP  VV++EYV++A +F 
Sbjct: 69  NQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAKSFF 128

Query: 138 EKDETGMVNAVLDQIARQFR 157
           E  E+G +N  LD IAR  R
Sbjct: 129 EGPESGFINGALDAIARDAR 148